Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00288 ATGAGGTGTCTAAGAGATGGTTTGCTATATCATGCGCAAGCGATAAAAACTGGCTTTGTACCCAACATCTTCAACTCTAATCAACTCATTCATCTCTACTCTAACCATGGTCTTCTGCAAGAGGCCCAGAAATTGTTCGATGAAATGCCCGAGCGAAATGTATTCTCTTGGAATGCAATCATATCGGCTTACATAAAAGCCGATAACTTGACACAAGCGCGCGCTCTTTTTGACTCTGCCTCTCACAAGGACTTGGTTTCTTATAATTCTATGTTAACGGGATATGTGGGTGCTGAAGGATATGAACATGAGGCGCTTAATTTGTTTACTAAAATTCTTTCTGCACGTGACACAATTGGGGTTGATGAGGTTACTTTGACGAGCATGTTAAACTTGACTGCCAAGCTAGGTGTGGCTTGTTATGGAAGGCAGATACATTCATATATGGTGAAAAGTGCTAATGATCTAAGTAATTTTGCAGTGAGTTCTCTTATTGACATGTACTCTAAATGTGCATTATTTTGCGAAGCATGCAATGTGTTCAGTGGTTGTGAGGGGAATGTGAATCCAGTTTCAAGGAATGCAATGATTGCAGCTTGTTGCAGGGAAGGAAAGATGGATATGGCTTTCAATCTATTCTGGAAAAATCCTGAATTAAATGATACAGTGTCTTGGAATACATTGATTGCAGGATATGCCCAACATGGTTATGTGGAGGACTCACTTGCATTGTTTGTTCGTATGGCTGAAAATGGTGTCAAGTGGAATGAATACACATTAGCAAGTGTTTTGAGTGCTTCCTCTGGTCTAAAATGCTTGAAACTCGGTAAATCTGTCCATGCCTGGGTATTAAAAAATGGTCTAagttcaaatcaatttatcagtAGTGGTATTGTTGACCTTTACTGTAAGTGTGGGAATATTAAGTATGCAGAGTCAGTCCACTCAGGAACGAAAAAGCAAAACCCCTTTGCAGTCACTTCATTGATTGTGGGCTATTCATCTCAAGGCAACATGGCAGAAGCCCGAAGGCATTTTGATTCACTAACAAAAAGGAACTCTGTTGTCTGGACAGCTTTATTTTCTGGTTATACCAAATCACAGCAATTTGAGGAAGTGTTCAAACTTCTGAGAGAGTACCTGACTACAGAAGCCCTAGTTCCTGACGCTCTGATCATCGTAAGCGTGCTTGGTGCCTGTGCAATACAAGCTGGTCTGGGTTCAGGAAAGCAAATTCATGCTTACATTTTGAGAATGAGGCTTGAAATGGATGAGAAGTTGCTGAGCGCTTTGATTGATATGTACTCAAAATGTGGGAATATCACTTATGCGGAGAAAATTTTCCAACTAGTTACCGATAGTGATAGAGATGCAGTCTTCTATAATGTCATGATAGCTGGTTATTCTAACCATGGGCTTGAAAATAAAGCTGTTAAGCTTTTTCAGGAAATGCTGGAGAAAAATATCAAGCCAGATGCAATAACCTTTGTTGCACTTCTGTCAGTTTGTAGACACTGTGGGCTAGTAGATTTAGGAGAACAACTATTTCATTCCATGGAAGAAGAACACAATATTTCACCTGAGATTGACCACTACGCATGTATGGTTGATATGTATGGAAGGGCTAATCAACTGGACAAGGCAGTGGCATTCATGAAGAAGATTCCCATACAGATGGATGCTACAATCTTGGGGGCGTTTCTGAATGCTTGCCGGGTAAGTGGCAACACAGCACTTGCCAGAGGCGCAGAGGAGAAACTGTTAAAATCTGAGGCATATAATGGTGCTCGGTACGTGCAACTGGCTAACTTCTATGCTGCAGAGGGGAACTGGGATGAGATgggaagaataagaaagaaaatgagagggaAGGAGGCCAAGAAGCTTGCTGGATGCAGTTGGATATATGTAGAAAATGGTGCCCATGTTTTCACTTCAGGTGATAGATCTCACTGCAAGGCAGATGCAATATATTCAGTATTGACCTGCTTGAATGAAATACTGTATTTGTCATCCTCAGAACTGGAGCAAGTTTA 2036 0.4023 MRCLRDGLLYHAQAIKTGFVPNIFNSNQLIHLYSNHGLLQEAQKLFDEMPERNVFSWNAIISAYIKADNLTQARALFDSASHKDLVSYNSMLTGYVGAEGYEHEALNLFTKILSARDTIGVDEVTLTSMLNLTAKLGVACYGRQIHSYMVKSANDLSNFAVSSLIDMYSKCALFCEACNVFSGCEGNVNPVSRNAMIAACCREGKMDMAFNLFWKNPELNDTVSWNTLIAGYAQHGYVEDSLALFVRMAENGVKWNEYTLASVLSASSGLKCLKLGKSVHAWVLKNGLSSNQFISSGIVDLYCKCGNIKYAESVHSGTKKQNPFAVTSLIVGYSSQGNMAEARRHFDSLTKRNSVVWTALFSGYTKSQQFEEVFKLLREYLTTEALVPDALIIVSVLGACAIQAGLGSGKQIHAYILRMRLEMDEKLLSALIDMYSKCGNITYAEKIFQLVTDSDRDAVFYNVMIAGYSNHGLENKAVKLFQEMLEKNIKPDAITFVALLSVCRHCGLVDLGEQLFHSMEEEHNISPEIDHYACMVDMYGRANQLDKAVAFMKKIPIQMDATILGAFLNACRVSGNTALARGAEEKLLKSEAYNGARYVQLANFYAAEGNWDEMGRIRKKMRGKEAKKLAGCSWIYVENGAHVFTSGDRSHCKADAIYSVLTCLNEILYLSSSELEQV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00288 678 Pfam PPR repeat 355 379 IPR002885 -
Bva14g00288 678 Pfam PPR repeat 429 450 IPR002885 -
Bva14g00288 678 Pfam PPR repeat 191 213 IPR002885 -
Bva14g00288 678 Pfam PPR repeat 326 353 IPR002885 -
Bva14g00288 678 Pfam PPR repeat 55 78 IPR002885 -
Bva14g00288 678 Pfam PPR repeat 532 554 IPR002885 -
Bva14g00288 678 Pfam PPR repeat 27 54 IPR002885 -
Bva14g00288 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Bva14g00288 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 388 IPR002885 -
Bva14g00288 678 Pfam E motif 577 635 IPR046848 -
Bva14g00288 678 Gene3D Tetratricopeptide repeat domain 502 633 IPR011990 GO:0005515
Bva14g00288 678 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 349 - -
Bva14g00288 678 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 215 - -
Bva14g00288 678 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 333 648 - -
Bva14g00288 678 Gene3D Tetratricopeptide repeat domain 1 118 IPR011990 GO:0005515
Bva14g00288 678 Pfam PPR repeat family 457 503 IPR002885 -
Bva14g00288 678 Pfam PPR repeat family 221 266 IPR002885 -
Bva14g00288 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Bva14g00288 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Bva14g00288 678 TIGRFAM PPR: pentatricopeptide repeat domain 55 84 IPR002885 -
Bva14g00288 678 TIGRFAM PPR: pentatricopeptide repeat domain 223 257 IPR002885 -
Bva14g00288 678 TIGRFAM PPR: pentatricopeptide repeat domain 460 493 IPR002885 -
Bva14g00288 678 Gene3D Tetratricopeptide repeat domain 272 407 IPR011990 GO:0005515
Bva14g00288 678 Gene3D Tetratricopeptide repeat domain 408 501 IPR011990 GO:0005515
Bva14g00288 678 Gene3D Tetratricopeptide repeat domain 139 271 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00288 Bva-Chr14 1489341 1491377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00288 6 661 Glycoside Hydrolase AT3G49170 29.774 1.84e-95 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00288 - - gmx:100803987 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00288 14 1489341 1491377 Bva14g00288 14 1489341 1491377 ECH