Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03569 ATGGAGGGAGCGGAAAGGAGTTGGGTGGTCCCTCGCCGCACCTCGGCTCTCTTCTTTATTTACGGCAATCAAGTTCCGTCAACGTGCACTAGAATACAAGTCTCATTCTTACTGGCAAGACTATTACTCCATAAGAAAGCGAAGACACAAACCATGGAAATAGATACCCATGACAACCGAGGCCACCGGCTTTCTGCTGATCCTCTTCCCTTTGCCCGAAGCTATCAACTGGAAGCACTGGAGAAagctataaaacaaaataccaTAGTGTTCTTGGAGACTGGGTCGGGCAAGACTTTGATTGCCATCATGCTTCTGCGTAGCTATGCTTATTTTCTGCGGAAGCCTTCTTCTTTTGTGGCAATCTTCTTGGTTCCACAAGTCGTCTTGGTCTCTCAACAAGCAGAAGCTGTGAAAATGCACACCGATTTAAGTGTCGGAATGTATTGGGGAGATATGGGAGTTGACTGTTGGGATGCTGCTACTTGGAAACGAGAATTGGAAAAACACGAgGTACTTGTTATGACTCCAGCAATATTGCTCCTTTGCTTGAGGCATAGCTTTTTCAAACTGAATATGATAAAGGTTTTAATAATGGATGAATGCCATCATGCTAGGGGTAGACACGATTATGCTTGCATCATGACTGAGTTCTATCATCCCCAGTTAAAATCTTCTGTCTCTGATCTGATACCACCCTCTGGGGCGCATCACGATCTCCCTCGGATTTTTGGTATGACTGCATCTCCTATTAAGTCGAAAGGCGGAGATTCTGAATTGACCTTCTGGAAAAGTATTCGTGAACTTGAGTCCCTAATGCATTCGAAGGTATATACATGTGTTAGTGAATCTGTCCTTGCTGAGTTCATACCATTCTCAACTCCAAAGTTCAAGTTTTACAGCCACAATGAAACTGtttcatttctattatttgaaCAGTTAGCAATCAAACTGAAGATTGTGAGAAAAAAGTATGAACAGTGCCTTGTTGAGTCAGATCTCACGGAAACTGCAACAAACTCTGcatacaaaagaataaatagaGTTTTCTCTGCTTTAGTATTTTGCTTGGATGAGCTTGGTGTTTGGTTAGCTTTGAAGGCTGCAGAGTCCTTATCAACCAATAAACCTGAAATATGGGGAAGCCTGGATTTCTCTGGCGAGgcaattgttaaaaatttttgtttggaaacCATGCATACGCTTGCAACTTGCATACCATCTTcTTCTCAGTGGTCTATCGGTGATAATATGAAATCAGATATGGATATGGGGCTACTAACCACAAAAGTCTGCTGTCTTATTGAATCTCTACTTGAATACAGGGATTTGAATGACATGAGATGCCTAGTTTTTGTTGAAAGAGTCGTTACAGCCATTGTTCTTCAGACGCTATTGAGTAACTTGCTTCCAAAACACAATAGCTGGAAGACTAAATACATAGCAGGAAATAATTCAGGGTTGCAAAATCAATctaggaaaaaacaaaatgaaattgtgGAAGAATTCCGTATGGGCTTGGTTAATGTTATTGTTGCAACATCAATTCTTGAAGAGGGATTAGACGTTCAAAGTTGCAATTTGGTTATTAGATTTGATCCATCGGCAACAGTGTGTAGTTTCATACAGTCCCGAGGACGTGCAAGGatgaaaaattcagaataCTTATTAATGGTTAAGAGAGGGGATTCTGCTACACATTCTCGACTGGAGAAATACCTTGCTAGTGGAGATATCATGAGAAAAGAGTCCCTGCATCATTCTTCCCTTCCTTGTGAGCCTTTCGAAAGTGATTTTCATAATGAGGAAACTTATTGTGTTGAAAGTACTGGAGCAATTGTCAATCTTCATTCCAgcattaatttgatatatttgtaCTGCTCACGGCTTCCTGCAGATGAGTACTTTAAACCAACTCCAAGGTGGCATAAAGAGACAGGGACATTGCATCTTCCGAAGAGTTGCCCTCTGCAAACTGTTTGTGTACAAGGGGACAGCAAATTCTTAAAGAATATTGCTTGTCTTGAAGCATGCAAGCAACTTCATAAAATTGGGGCTTTGACAGATTATCTTGTTCCTGATATTGTCATGGAAGAGGCTGAGGTGGAAGAATTTGGGAGTGAACCTTACAATGAGGAGCAACCCTCTTATATCCCATCTGAACTGGTCAATAGCTTTTCAAACACTTCCAAGATGATGTACCATTGTTATTTGATACAGTTGGAGCGAGATTTCATCTATGATATATCGATTCATGACATTATGATTGCCACAAGAAGTGAGCTTAACCCAGAAGTTGGATGTATACAATTTCAAATGTGTGTTGATCGAGGTACCCTTAGAGTGAACCTTAGATATGTGGGAATTATTGAACTTGGTCCACATGAGgTGCTTCTGTGTAGAAGATTCCAAATGACCATATTGAGGGTCCTTCTAGATCAAAACATGGATAAGTTGGGGGCGATTTCAAATGAACCCTACATGGAAGATAATCATCAGATTGATTATCTTCTACTTCCAGCAACTGCCATGCACCAGAGGCCTTTGATCATTGATTGGTTATCTGTGACTGCTGTATCTTTTTCACCTAAAATTATCTGTAAGGATCATGCTGATAATTTATGGACCAAAAATGGTCATGTTTGCATTTGCAAACTTGAAAATTGCTTGGTCTATACTCCTCATAATGGTCATAATTATATCATCACTGGTACAACAGAATTGGATGGGAACTCAGTATTAAAACTAAGCGATGGCAGTGTTACTACATACAAGAAGTACTACAAAAAGAGgCATGGGATTGATTTGTATTTTGATTATCAACCACTACTTAAAGGAAGACATGTTTTTCAAGTACAAAATCATCTCCATAGATGCAGAAAAGAGGACAGagAATCAAGCAAGGCGTCTGTTGAATTGCCTCCTGAACTTTGTTATGTGATCATGTCACCAATATCAATCAGTACCATTTATTCATTCTCGTTTATCCCATCAATCATGCATCGGCTTGAGTCATTGCTTGTTgctttcaacttaaaaaagatGCACCTGGATCATTGCATGCAAAATGATATTCCAACAGTCAAGgtCTTGGAGGCCATTACTACAAAAAAATGCCAAGAATCCTTTCACTATGAATCCCTGGAGACTCTTGGGGattcttttctaaaatatgCTGCTAGTCAACAGATGTTTAAGACCTACCAAAATCATCATGAGGGTCTCCTGAGTGTGAAGAGGGAGAAGATGATTTCTAATGTGGTCCTATGTAAGTTTGGGTGCCACCGCAGACTTCCGGGTTTCATAAGGTGTGAGCCTTTTGATCCTAAAAGTTGGATTATACCTGGTGATAACTCCAGAAGTTTGTCATTACAAGAGGAGTTGGTTTCTgatggaataaaaatttacataagtggtaaaagaaaagtaaaatgtaAGGTTGTTGCTGATGTTGTTGAGGCACTGATCGGTGCCTTCCTTAGCACAGGTGGTGAAAAATCTGCGTTATTTTTTATGGACTGGGTTGGAATTAAAGTAGATTTTGACATTATACCCTGTGCAAGGAACCTGAGCTTTCACCCAGAGAAGCTTGTAAATGTTCGTTTTCTAACTTCGTTATTAAACTACTCATTCCATGACACGTCACTTTTAGTTGAAGCTCTGACCCATGGTTCATATATGCTGCCAGAAATTCCAAGATGTTACCAGAGACTAGAATTTCTTGGGGATTCAGTGTTGGATTATCTCATTACCATGTATTTGTACGAAAAATATCCTGTCATGACACCAGGGTTGTTGACAGACTTGAGGGCTGCTTCTGTGAATAATGATTGCTATGCACGTTCTGCTATTAAGGTTGGGTTACACAAGCACGTACTCCATGCTTCACAGGAACTACACAAGCATATCGTCGTCACagttaatgattttgaaaagtCATCTTCAGAGTCAACTTTTGGATGGGAGTCAGAGACATCTTTCCCCAAGGTACTTGGTGATATTATAGAGTCTCTGGCTGGAGCTATTCTCGTCGATTCAGGATACAGAAAGGAGGTTGTCTTTCAGAGCATGAGGCCTTTGTTAGAACCCCTCGTTACACCTGAGACGCTGAAGCTTCATCCCGTCAGAGAGTTGAATGAACTGTGCCAGAAAGAAAACTATCTCATGAAAAAACCCATTATTTCCTGCATCAATGGTGAAGCTTCTGTTACAATTGAGGTTGAAGCTAATGGGGTCACGCACAAGCATACTTCTATGGCAGCCGAGAAGAAGACAGCCAAAAAATTAGCCTCTAAGGAAGTTTTGAAGTCCTTGAAGTTGAAGGAAGCCAATTCTCGATA 4340 0.3876 MEGAERSWVVPRRTSALFFIYGNQVPSTCTRIQVSFLLARLLLHKKAKTQTMEIDTHDNRGHRLSADPLPFARSYQLEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYFLRKPSSFVAIFLVPQVVLVSQQAEAVKMHTDLSVGMYWGDMGVDCWDAATWKRELEKHEVLVMTPAILLLCLRHSFFKLNMIKVLIMDECHHARGRHDYACIMTEFYHPQLKSSVSDLIPPSGAHHDLPRIFGMTASPIKSKGGDSELTFWKSIRELESLMHSKVYTCVSESVLAEFIPFSTPKFKFYSHNETVSFLLFEQLAIKLKIVRKKYEQCLVESDLTETATNSAYKRINRVFSALVFCLDELGVWLALKAAESLSTNKPEIWGSLDFSGEAIVKNFCLETMHTLATCIPSSSQWSIGDNMKSDMDMGLLTTKVCCLIESLLEYRDLNDMRCLVFVERVVTAIVLQTLLSNLLPKHNSWKTKYIAGNNSGLQNQSRKKQNEIVEEFRMGLVNVIVATSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRARMKNSEYLLMVKRGDSATHSRLEKYLASGDIMRKESLHHSSLPCEPFESDFHNEETYCVESTGAIVNLHSSINLIYLYCSRLPADEYFKPTPRWHKETGTLHLPKSCPLQTVCVQGDSKFLKNIACLEACKQLHKIGALTDYLVPDIVMEEAEVEEFGSEPYNEEQPSYIPSELVNSFSNTSKMMYHCYLIQLERDFIYDISIHDIMIATRSELNPEVGCIQFQMCVDRGTLRVNLRYVGIIELGPHEVLLCRRFQMTILRVLLDQNMDKLGAISNEPYMEDNHQIDYLLLPATAMHQRPLIIDWLSVTAVSFSPKIICKDHADNLWTKNGHVCICKLENCLVYTPHNGHNYIITGTTELDGNSVLKLSDGSVTTYKKYYKKRHGIDLYFDYQPLLKGRHVFQVQNHLHRCRKEDRESSKASVELPPELCYVIMSPISISTIYSFSFIPSIMHRLESLLVAFNLKKMHLDHCMQNDIPTVKVLEAITTKKCQESFHYESLETLGDSFLKYAASQQMFKTYQNHHEGLLSVKREKMISNVVLCKFGCHRRLPGFIRCEPFDPKSWIIPGDNSRSLSLQEELVSDGIKIYISGKRKVKCKVVADVVEALIGAFLSTGGEKSALFFMDWVGIKVDFDIIPCARNLSFHPEKLVNVRFLTSLLNYSFHDTSLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITMYLYEKYPVMTPGLLTDLRAASVNNDCYARSAIKVGLHKHVLHASQELHKHIVVTVNDFEKSSSESTFGWESETSFPKVLGDIIESLAGAILVDSGYRKEVVFQSMRPLLEPLVTPETLKLHPVRELNELCQKENYLMKKPIISCINGEASVTIEVEANGVTHKHTSMAAEKKTAKKLASKEVLKSLKLKEANSR 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03569 1446 CDD SF2_C_dicer 430 559 - -
Bva13g03569 1446 CDD DEXHc_dicer 72 280 - -
Bva13g03569 1446 SMART ultradead3 68 288 IPR014001 -
Bva13g03569 1446 Gene3D - 1372 1441 - -
Bva13g03569 1446 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 619 701 IPR005034 GO:0016891
Bva13g03569 1446 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1373 1440 IPR014720 -
Bva13g03569 1446 SUPERFAMILY RNase III domain-like 1030 1183 IPR036389 GO:0004525|GO:0006396
Bva13g03569 1446 SUPERFAMILY dsRNA-binding domain-like 1329 1440 - -
Bva13g03569 1446 Pfam DEAD/DEAH box helicase 74 208 IPR011545 GO:0003676|GO:0005524
Bva13g03569 1446 Gene3D - 71 324 IPR027417 -
Bva13g03569 1446 SMART riboneu5 1028 1184 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 SMART riboneu5 1215 1370 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 ProSitePatterns Ribonuclease III family signature. 1236 1244 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 ProSiteProfiles Ribonuclease III family domain profile. 1032 1164 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 SUPERFAMILY PAZ domain 877 980 IPR036085 GO:0005515
Bva13g03569 1446 Pfam PAZ domain 878 1005 IPR003100 GO:0005515
Bva13g03569 1446 Pfam Ribonuclease III domain 1046 1164 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 Pfam Ribonuclease III domain 1236 1347 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 598 IPR001650 -
Bva13g03569 1446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 268 IPR014001 -
Bva13g03569 1446 PANTHER - 695 1437 - -
Bva13g03569 1446 CDD RIBOc 1031 1183 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 Gene3D paz domain 866 984 - -
Bva13g03569 1446 ProSiteProfiles PAZ domain profile. 885 982 IPR003100 GO:0005515
Bva13g03569 1446 Pfam Dicer dimerisation domain 619 693 - -
Bva13g03569 1446 Gene3D - 425 581 IPR027417 -
Bva13g03569 1446 Gene3D Ribonuclease III domain 1025 1174 IPR036389 GO:0004525|GO:0006396
Bva13g03569 1446 Gene3D Ribonuclease III domain 1193 1368 IPR036389 GO:0004525|GO:0006396
Bva13g03569 1446 ProSiteProfiles Ribonuclease III family domain profile. 1200 1347 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 PANTHER DICER-RELATED 695 1437 - -
Bva13g03569 1446 SMART helicmild6 464 551 IPR001650 -
Bva13g03569 1446 SMART PAZ_2_a_3 856 1008 IPR003100 GO:0005515
Bva13g03569 1446 CDD RIBOc 1215 1370 IPR000999 GO:0004525|GO:0006396
Bva13g03569 1446 Pfam Helicase conserved C-terminal domain 438 549 IPR001650 -
Bva13g03569 1446 Gene3D Dicer dimerisation domain 614 702 IPR038248 -
Bva13g03569 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 568 IPR027417 -
Bva13g03569 1446 SUPERFAMILY RNase III domain-like 1200 1367 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03569 Bva-Chr13 24082211 24093381 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03569 K11592 - qsu:111984880 1889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03569 13 24082211 24093381 Bva13g03569 13 24082211 24093381 ECH