Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03568 atgGAGGTTGTATTTCAACCTTTGCGTAGTTTCACCACTATTTTGAACTGTTATCAGCCGCTTCAGATTCTACGAAAGCATAATCATTCTTGTTCAAAACATAAGCTTTTTCCGGCCTCTGGTTTCTTCACCACCCTCTCCTATTCTTATCGTTCTCCTTCTGttgtttttGCTACGCCGGAGAACCAATTGAACGTTGAAGTGGACACCGATACAAGAGAATGGGCGCTGCAAGATTTTTATTCCCTCAGAAGGGATGTGGAAATTACTTCCCGACTTGTTGAAGAGATTAGAGAATCTGCTGAACTACAGCTATTGGAACAAGAACTCGCAGATCTAGAGTTGAAAGCAGCTGATAGCTCCTTTTGGGACAATCGAGCTGAAGCTCAAGAGACTCTTTCGACCTTGACTGAAGTCaaagagaagataaaattGCTTAATGATTTCAAAACCCAGGTTGAGGATGCAGAGACAATTGTTACGCTAACTGAGGAGATGGACTCTGTTGATACAGGACTCCTGGAGGAGGCTGCCAGTCTTATTAAAGAACTTAATAAAGCACTGGATATTTTCGAGTTGACTCAGCTTCTTTCTGGTCCATATGACAAAGAAGGTGCCGTTATCTCTATTACAGCTGGTGCTGGAGGTACTGATGCACAGGATTGGGCTGACATGCTTCTTAGGATGTACATGAGATGGGGAGAGAAACAGAGATACAAGACAAGGGTGGTTGAGAAATCCGTTGGAGAAGAAGCTGGGATTAAATCTGCCACCATTGAAGTTGATGGTCGCTATGCTTATGGGTATTTATCCGGAGAAAAAGGAACACATCGCATAGTTCGTCAGTCTCCTTTTAATGCTAAAGGTCTTCGTCAGACAAGCTTTTCTGGTGTTGAAGTCATGCCTCTTCTTCCTGAAGAATCTGTGGATGTTGAAATACCTGAGGAGGACCTCGAGATCAGTTTTTCAAGAGCAGGTGGAAAGGGAGGTCAGAATGTCAACAAGGTTGAAACTGCTGTCCGCATAACACACATCCCAACTGGTGTCACGGTTCGGTGTACAGAAGAGAGATCCCAACTGGCAAATAAGATCAAGGCCTTAAGCCGGTTAAAAGCCAAGCTGCTAGTTATAGCTGAGGAGCAACGTGCTTCTGAAATTAGGCAAATCCGGGGAGATGTAGTCAAGGCTGAATGGGGACAACAAATACGAAACTATGTGTTCCATCCATATAAACTAGTAAAAGATGTGAGAACTGGATATGAAACCTCAGATATCACTTCTGTTATGGATGGAGAGTTGGAGCCCTTCATCAAATCATACCTCAAATACAAGTACAATAAGGCATCGCCTGCAGCTGGGGTCAACTA 1367 0.4309 MEVVFQPLRSFTTILNCYQPLQILRKHNHSCSKHKLFPASGFFTTLSYSYRSPSVVFATPENQLNVEVDTDTREWALQDFYSLRRDVEITSRLVEEIRESAELQLLEQELADLELKAADSSFWDNRAEAQETLSTLTEVKEKIKLLNDFKTQVEDAETIVTLTEEMDSVDTGLLEEAASLIKELNKALDIFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTRVVEKSVGEEAGIKSATIEVDGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESVDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIRQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPFIKSYLKYKYNKASPAAGVN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03568 455 Gene3D - 304 400 - -
Bva13g03568 455 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 49 451 - -
Bva13g03568 455 Pfam RF-1 domain 308 417 IPR000352 GO:0003747|GO:0006415
Bva13g03568 455 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 324 340 IPR000352 GO:0003747|GO:0006415
Bva13g03568 455 Coils Coil 174 194 - -
Bva13g03568 455 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 49 451 - -
Bva13g03568 455 Coils Coil 96 116 - -
Bva13g03568 455 SUPERFAMILY Release factor 106 446 IPR045853 -
Bva13g03568 455 SMART PCRF_a_2 161 273 IPR005139 GO:0006415
Bva13g03568 455 Hamap Peptide chain release factor 2 [prfB]. 79 445 IPR004374 GO:0005737|GO:0006415|GO:0016149
Bva13g03568 455 Gene3D - 208 438 - -
Bva13g03568 455 Pfam PCRF domain 106 298 IPR005139 GO:0006415
Bva13g03568 455 Gene3D Release factor 86 201 - -
Bva13g03568 455 TIGRFAM prfB: peptide chain release factor 2 84 444 IPR004374 GO:0005737|GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03568 Bva-Chr13 24073215 24077443 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03568 K02836 - gmx:100775574 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03568 13 24073215 24077443 Bva13g03568 13 24073215 24077443 ECH