Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03567 ATGATATCGCTTCTGCTACTGCTGCTcctcttcttcatttctttgttCCTTTTCCTATTATTCAAATTTGCGACCGCTTATGGCGATTTCACTTTGATGTCAAAGAAATATGCAAAACGCGAAGAAATCGAAGATAAGgtTGTTTGGATTACGGGTGCTAGCCGCGGAATTGGAGAGATTCTTGCTAAGCAACTTGCAAGTTTAGGGGCCAAGCTAATTATCTCTGCGAGGAATGAAGCTGAACTGGAGCGAGTAAAGAGACAGCTGAATGGTAAGTATGCACCTAATGAGGTCAAGATTTTACCATTGGATTTAGCATCTGGAGAGGATTGCCTTCGGAAAGCTGTTGAGAAAGCTGAATCCTTTTTCTCTGGTTCTGGTGTTGATTTTATGATTCATAATGCAGCTTATGAGCGTCCTAAAGCATCAGCTTTACATGTAACTGAGGAAAGTTTGAAGGCAACATTTGATGTCAATGTTCTGGGCACAATAACTCTGACACGCCTATTGGCACCCTTCATGTTGAAGCGGGGGCAAGGTCATTTTGTGGTGATGAGCAGTGCTGCAGGGAAGACACCTGCCCCTGGTCAGGCTGTGTACGCTGCTTCTAAATATGCTCTAAACGGGTACTTCCATACATTGCGTTCTGAGCTCTGTCAGAAGGGAATCAGGGTAACTATTGTCTGTCCTGGACCAATAGAAACATCAAATTGTTATGTATTGAAACCTTTAGAGAATGGTTCATCTGAGAAGCGAGTACCATCGGAAAGATGTGCAGAGCTGACTATTATTGCTGCAACCCATGGGTTGAAAGAAGTTTGGATATCATATCAGCCTGTGCTAGCTGTCATGTATCTTGTTCAATACATGCCAAGCATCGGTTATTGGCTCATGGACAagGTTGGCAACAATCGCGTAGAAGCTGCTGCACATAAGGGAAACACTTACTCTTTGAGCTTATtgtttggaaaaaagaaagcaccGTG 986 0.4148 MISLLLLLLLFFISLFLFLLFKFATAYGDFTLMSKKYAKREEIEDKVVWITGASRGIGEILAKQLASLGAKLIISARNEAELERVKRQLNGKYAPNEVKILPLDLASGEDCLRKAVEKAESFFSGSGVDFMIHNAAYERPKASALHVTEESLKATFDVNVLGTITLTRLLAPFMLKRGQGHFVVMSSAAGKTPAPGQAVYAASKYALNGYFHTLRSELCQKGIRVTIVCPGPIETSNCYVLKPLENGSSEKRVPSERCAELTIIAATHGLKEVWISYQPVLAVMYLVQYMPSIGYWLMDKVGNNRVEAAAHKGNTYSLSLLFGKKKAP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03567 328 Pfam short chain dehydrogenase 46 236 IPR002347 -
Bva13g03567 328 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 5 326 - -
Bva13g03567 328 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Bva13g03567 328 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Bva13g03567 328 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Bva13g03567 328 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Bva13g03567 328 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Bva13g03567 328 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Bva13g03567 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 299 IPR036291 -
Bva13g03567 328 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 46 236 - -
Bva13g03567 328 Gene3D - 28 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03567 Bva-Chr13 24068203 24073214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03567 4 230 Lipid Metabolism Gene Families AT1G67730 31.897 3.74e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03567 K11165 - qsu:111984857 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03567 13 24068203 24073214 Bva13g03567 13 24068203 24073214 ECH