Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02422 ATGTCTGATGCGTTCTGCTCTGACTGTAAGCGCCAGACGGAGGTGGTTTTCGATCACTCGGCGGGTGACACAGTTTGTTCAGAGTGTGGGCTTGTGCTAGAGTCCCATTCTATTGACGAGACCTCTGAGTGGCGTATCTTCGCCAACGAGTCTGGTGATAACGACCCGGTCCGTGTTGGAGGACCGACTAACCCGCTTCTAGCTGATGGCGGCTTATCAACTGTGATAGCCAAGCCTAACGGAGCCAGCGGCGAGTTTCTCTCGTCGTCCCTTGGTCGTTGGCAGAATCGCGGCTCCAACCCGGATCGAGGGTTGATTCTCGCCTTTAAGACCATTGCTACTATGTCTGATAGGTTGGGGCTTGTTGCAACCATTAAGGATCGGGCTAATGAGATATATAAGAGGGTTGAAGATCAAAAATCTAGTAGAGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGaaatttgcTCTGTTGCCAATGGAGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAATGGTCAGTCGGTGGAGATGGGAACAATACATGCTGGAGACTTTATGAGGCGATTTTGTTCTAATCTTGGTATGAACAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCAGAAATCAGAGGAGTTTGATATAAGGAGGAGCCCCATATCAATTGCTGCTGCagttatatacattataaccCAGCTTTCGGATGAGAAGAAACCTCTCAAAGACATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCCTACAAGGATCTTTACCCACatgtttcaaaaataatacCAAACTGGTATGCTAAAGAGGAGGATCTGAAGAACCTTTGCAGCCCTTG 938 0.4595 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02422 312 Gene3D - 208 311 - -
Bva13g02422 312 Pfam TFIIB zinc-binding 6 45 IPR013137 -
Bva13g02422 312 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
Bva13g02422 312 SUPERFAMILY Cyclin-like 207 308 IPR036915 -
Bva13g02422 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Bva13g02422 312 CDD CYCLIN 104 185 IPR013763 -
Bva13g02422 312 Gene3D - 5 193 - -
Bva13g02422 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 SMART cyclin_7 211 290 IPR013763 -
Bva13g02422 312 SMART cyclin_7 110 192 IPR013763 -
Bva13g02422 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 312 - -
Bva13g02422 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Bva13g02422 312 Pfam Transcription factor TFIIB repeat 204 290 IPR013150 GO:0017025
Bva13g02422 312 CDD CYCLIN 207 289 IPR013763 -
Bva13g02422 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 312 IPR000812 GO:0006352|GO:0070897
Bva13g02422 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02422 Bva-Chr13 18332954 18336832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02422 K03124 - fve:101305780 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02162 04 20891059 20894346 Bva13g02422 13 18332954 18336832 BWGD
Bva13g02422 13 18332954 18336832 Bva13g02422 13 18332954 18336832 ECH