LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g01781	ATGCCGGCCTTAGCTTGTTGCGTGGATGCTGCAGTTGCTCCTCCCGGCTACGCTTTTGCTGGGGACAGCTCTCTTCTAGCGCCGGTCACATTTACTGGCGTACCTCCGGCGACAACCAACGCCTCTGCCGCCGATGTCACCGTTGCCGTTGAGAATCCTCATTGGTCACCCTCGCTGTCTGCTGCTCTTTATAAGATCGATGGATGGGGCGCTCCCTACTTCTGTGTGAATTCCTCTGGGAATATTTCGGTTCGCCCACACGGTCCAGAGACTATGCGTCATCAGGAGATTGACTTGCTGAAGATTGTGAAGAAAGTCTCGGATCCGAAATCTTCTGGCGGACTCGGGTTGCAGCTCCCTCTCATTGTCCGACTACCGGACGTGCTTAAGAACCGGCTTGAATCCCTTCAATCTGCCTTCGAGTATGCAATCCGATCTCAAGGATATCAGTCTCATTATCAAGGCGTTTACCCGGTGAAATGCAATCAGGACCGGTTCGTTGTGGAGGATATAGTGAAATTCGGATCACCATTCCGGTTCGGATTGGAGGCTGGGTCGAAGCCCGAACTTCTTCTGGCTATGAGCTGTTTGTGCAGTGGTAATCCAGAATCCCTTCTGGTCTGCAATGGGTTTAAAGATGGCGAATATATTTCTCTGGCTTTGGTTGCCAGGAAGCTGGCATTGAATACTGTAATCGTTCTTGAGCAAGAAgaagaacttgatttggtcaTTGAATTCAGTAAGAAGCTCTGCATTCGGCCTGTGATAGGCGTTCGAGCTAAGCTGCGTACTAAGCATTCGGGGCATTTTGGGTCAACTTCAGGTGAGAAAGGGAAGTTTGGGCTGACCACAACTCAGATTGTGCGGGTTGTGAGGAAGCTGGAGCAAGTGGGTATGCTTGACTGTCTTCAATTGCTGCATTTTCATATTGGTTCTCAAATTCCTTCGACTGCATTGCTTGCTGATGGTGTGGGAGAAGCTGCACAGATCTATTGCGAATTGGTTCGACTTGGTGCTCATATGCAGGTTGTTGACATTGGAGGTGGACTGGGTATCGATTATGATGGTTCAAAGTCGACTGATTCTGATATTTCTGTTGGGTATAGTCTCGAAGAGTATGCAGCAGCAGTTGTTCAAGCGGTTCAATACGTTTGCGATCGCAAGTCTACCAAGCACCCTATTATTTGCAGTGAAAGTGGCCGAGCTATTGTGTCTCACCATTCAGTTCTGATCTTTGAGGCTGTTTCTTCAAGTGTATATGAAGCCCCAGCATTGTCCACAGTTACACTTCAGTACTTGGTTGAGGGGCTCCCTGATGAAGCTCGTGCTGATTATAATAATCTATATTCTGCAGCAATTAGGGGTGACCATGACACCTGTTTGCTCTATACTGATCAATTGAAGCAAAGGTGTGTCGATCAATTCAAGCAAGGGTCTTTGGGTATTGAGCAACTTGCCGCTGTAGATGGTTTGTGTGAATTGGTCAGTAAGGCAATTGGGGCTGCGGATCCAGTTCGAACATACCATGTCAATCTCTCTGTTTTCACTTCCATTCCTGATTTCTGGGGCATTGGCCAGCTATTTCCTATAGTTCCTATACATCGTCTGGATGAGCGGCCCTCAGTGAGGGGAGTTCTGTCTGATTTGACTTGTGATAGTGATGGGAAGATCGATAAGTTCATTGGCGGTGAATCAAGCTTGTTGCTCCATGAACTGAAAGGCGAAGGTGGTGGTGGAAGGTACTATATGGGGATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTCGGTGGACTTCACAATCTGTTTGGTGGCCCGACCGTTGTTCGTGTTTCACAAAGCGATGGCCCGCATAGCTTCGCTGTGACGCGTGCTGTGCCTGGGCCGTCTTGTGGGGACGTCCTCCGAGTGATGCAGCACGAGCCCGAGCTCATGTTCGAGACCCTCAAGCACCGGGCAGAAGAGTTTATACATCAACACGAGGATGACGACAGTCTACTGAATGCTGCGGCGCTGGCCAATGGCCTCGCCCGCTCCTTCAACAACATGCCTTATTTGGTCTCAGCCTCGTCTTGTTGCTTGACTGCCATTAACAACAACAACTTTTACTGCTGCAGTGGCGACGATTTCCATGCTGTTGCTGCTGATTCTGCTTCTGGAGAAGAGGAGCAGTGGTCTTATTGCTGTGCTTG	2189	0.4906	MPALACCVDAAVAPPGYAFAGDSSLLAPVTFTGVPPATTNASAADVTVAVENPHWSPSLSAALYKIDGWGAPYFCVNSSGNISVRPHGPETMRHQEIDLLKIVKKVSDPKSSGGLGLQLPLIVRLPDVLKNRLESLQSAFEYAIRSQGYQSHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCSGNPESLLVCNGFKDGEYISLALVARKLALNTVIVLEQEEELDLVIEFSKKLCIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQIVRVVRKLEQVGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAHMQVVDIGGGLGIDYDGSKSTDSDISVGYSLEEYAAAVVQAVQYVCDRKSTKHPIICSESGRAIVSHHSVLIFEAVSSSVYEAPALSTVTLQYLVEGLPDEARADYNNLYSAAIRGDHDTCLLYTDQLKQRCVDQFKQGSLGIEQLAAVDGLCELVSKAIGAADPVRTYHVNLSVFTSIPDFWGIGQLFPIVPIHRLDERPSVRGVLSDLTCDSDGKIDKFIGGESSLLLHELKGEGGGGRYYMGMFLGGAYEEALGGLHNLFGGPTVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHEPELMFETLKHRAEEFIHQHEDDDSLLNAAALANGLARSFNNMPYLVSASSCCLTAINNNNFYCCSGDDFHAVAADSASGEEEQWSYCCA	729

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva13g01781	729	Gene3D	-	424	504	-	-
Bva13g01781	729	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	157	175	IPR022653	-
Bva13g01781	729	Gene3D	Alanine racemase	126	407	IPR029066	-
Bva13g01781	729	TIGRFAM	speA: arginine decarboxylase	55	685	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	338	351	IPR022657	-
Bva13g01781	729	PANTHER	ARGININE DECARBOXYLASE	1	729	-	-
Bva13g01781	729	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	157	175	IPR000183	GO:0003824
Bva13g01781	729	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	395	414	IPR000183	GO:0003824
Bva13g01781	729	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	181	193	IPR000183	GO:0003824
Bva13g01781	729	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	300	313	IPR000183	GO:0003824
Bva13g01781	729	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	589	602	IPR000183	GO:0003824
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	125	140	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	207	222	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	589	610	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	233	254	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	511	532	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	385	402	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	536	561	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	149	163	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PRINTS	Arginine decarboxylase signature	257	279	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	152	405	IPR022644	GO:0003824
Bva13g01781	729	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	64	612	IPR009006	GO:0003824
Bva13g01781	729	PIRSF	ARGDC	37	688	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	SUPERFAMILY	PLP-binding barrel	126	407	IPR029066	-
Bva13g01781	729	CDD	PLPDE_III_ADC	116	610	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva13g01781	729	PANTHER	ARGININE DECARBOXYLASE	1	729	IPR002985	GO:0006527\|GO:0008295\|GO:0008792

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g01781	Bva-Chr13	14368509	14371650	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva13g01781	K01583		-	mnt:21387985	1130.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva13g01781	13	14368509	14371650	Bva13g01781	13	14368509	14371650	ECH