Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00994 atgGGTACCATGGCAAAggccatttttctctttggcattgcttttcttttctgcattAATAATGTCACAGAGGCCTCTCGCGATCTCCTCCAGAGTGGCCCTGTTGAACTTTTTGATGTCACAAAATTTTATCGCAAACCTACTGAAGAAGAAGTGGAATATGATGAAGACTATATTCCTGGTAGCTATTATGATGCATTTGCGGCAGTATGGGACGCAGCATGCAGAAATAGCACTGGTTCTGTAAAGATTCTGGTCCCAAAAGGAACCTTCCTTCTTACCCCAATAATCTTTAGTGGACCATGCAAATGCGCAAAGCCCATCGTCTTTGAAGTTGCGGGGACTATCGTATCTCCAACAAACCCTTCTCTGTTTCCAAATGCTCAATGGATCGAATTTTCAGACATTGATGGCTTGGTGCTGAATGGTAATGGAGTTTTCGATGGACAAGGAGGTGTGGTTGATAATGAAACTCATGTGTCTGCTTGGGCCACCAACGACTgcaggaaaaacaaaaattgtgtTCCACCCTCGTCTAATCTGAGATTCGGAAAAGTGCACAACTCCATTGTGACAGGGATCACTTCCTTAAACAGCAAATGGTTCCACCTCCACGTTTTTTCATGCAATAACTTTACAGCCACTGACATCCGCATAACTGCTCCTGGAGACAGTCCCAACACAGATGGAATACATTTTAGTCAATGCAATCTGGTGAATGTGGCCAATAGCAACATTGCAACTGGGGatgattgcatttccatcgGGCAAGGCTGCATCAACACTAATATCCATAATATTACCTGCGGTCCAGGCCATGGCATCAGCATTGGAAGCCTTGGCAAGGAAAGGGATGACAAAAGTGTGGAAGGGGTCACTGTCACAGACTGCACATTTACTAACACAACTAATGGTGCCAGAATCAAAACCTGGATTGGACAGAGCCCAGGAGAAGTGAAGAAGATTGTCTATGAGAACCTTGTCATGAACAATGTTAAGAATCCCATTGTCATTGATCAAAGTTATGGTTCCAAGACAGTTAGAGGGCCATCAAACTCATTGTGGAAGATCACTGACGCTCATTTCAGGAAGATAAAAGGAACAACAGTCTCCAATGTTGCCGTGTCTTTGCAATGCAGTTCTAAGAACCCCTGCGAAGGCGTTGAAGTGGCTGACGTTGATTTGGTTTACAATGGagatccaaaaaataaaacacttgcATCATCATGCAACAATGCAAAGGCTAAATTCGCCGGCAAACTGAGCCCAGGAGCTTGTCTgtg 1283 0.4092 MGTMAKAIFLFGIAFLFCINNVTEASRDLLQSGPVELFDVTKFYRKPTEEEVEYDEDYIPGSYYDAFAAVWDAACRNSTGSVKILVPKGTFLLTPIIFSGPCKCAKPIVFEVAGTIVSPTNPSLFPNAQWIEFSDIDGLVLNGNGVFDGQGGVVDNETHVSAWATNDCRKNKNCVPPSSNLRFGKVHNSIVTGITSLNSKWFHLHVFSCNNFTATDIRITAPGDSPNTDGIHFSQCNLVNVANSNIATGDDCISIGQGCINTNIHNITCGPGHGISIGSLGKERDDKSVEGVTVTDCTFTNTTNGARIKTWIGQSPGEVKKIVYENLVMNNVKNPIVIDQSYGSKTVRGPSNSLWKITDAHFRKIKGTTVSNVAVSLQCSSKNPCEGVEVADVDLVYNGDPKNKTLASSCNNAKAKFAGKLSPGACL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00994 427 PANTHER POLYGALACTURONASE 3 422 - -
Bva13g00994 427 SUPERFAMILY Pectin lyase-like 64 427 IPR011050 -
Bva13g00994 427 PANTHER - 3 422 - -
Bva13g00994 427 Pfam Glycosyl hydrolases family 28 79 416 IPR000743 GO:0004650|GO:0005975
Bva13g00994 427 Gene3D - 62 422 IPR012334 -
Bva13g00994 427 SMART pbh1 319 340 IPR006626 -
Bva13g00994 427 SMART pbh1 209 235 IPR006626 -
Bva13g00994 427 SMART pbh1 289 310 IPR006626 -
Bva13g00994 427 SMART pbh1 236 257 IPR006626 -
Bva13g00994 427 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00994 Bva-Chr13 4781191 4788636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00994 1 427 Glycoside Hydrolase AT1G43080 40.139 5.01e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00994 K01213 - gmx:100802357 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00994 13 4781191 4788636 Bva13g00994 13 4781191 4788636 ECH