Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00976 ATGGATTGTCATTATATTCTTGGAGGAATTCTAGCTTCTGCCTTGGCATTTGTGTTTGCTCTAAACAGTTTTgcagagaagaagaacaagaataGCAAATGCTCAATCCATGTAAAAAGTAATGGGTTTTCAAAGATATCAGAAGATGGATTAAGCCCGCCAGAGGTTCCAGGAAGTACAGATATAATCATTGTGGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTATACACTAGGAAAGGATGGGCGGCGAGTGCATGTTATTGAAAGGGACTTGAACGAGCCTGACAGGATTGTGGGCGAATTACTACAACCCGGGGGTTTTCTGAAGTTACTTGAGCTGGGTCTTGAGGATTGTGTGGATGAAATTGATTCTCAGAGAGTCTTTGGCTATGCTCTTTATAAAGATGGGAAAAATGCCAAACTAGCATATCCCTTGGAAAAATTTGACTCTGATGTTTCTGGGAGAAGCTTTCATAATGGTCGTTTCATACagagaatgagagaaaagGCTGCTTCTCTTCCAAATGTAAAATTAGAACAAGGAACAGTCACATCTCTACTGGAAGAAAATGGAACCATCAAAGGGGTCCATTACAAAACCAAGAGCGAACAAGAGCTCACAGCAAAGGCTTCCCTCACCATAGTATGTGATGGTTGCTTTTCCAACTTGAGGCGTTCTCTTTGCGACCCAAATGTTGATGTACCGTCTCACTTTGTTGGCCTGGTCTTAGAGAACTGTAATCTTCCATATGAAAACCATGGACATGTTATCTTGGGCGATCCTTCACCTATTTTGTTTTACCCCATCAGTAGCACTGAGATACGCTGTTTGGTTGATGTGCCTGGACAAAAGGTACCTTCCATTGCAAAAGGTGAAATGGCCAGTTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCCCCAGAGCTCTATACTGCTTTCGTAGCTGCAATTGATAAAGGGAACATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCTCCTCATCCCACGCCTGGTGCACTTCTGATGGGAGATGCCTTCAATATGCGTCACCCTTTAACTGGAGGAGGAATGACTGTGGCCCTAGCTGACATTGTTGTGCTGAGGAACCTACTTCGACCTCTGCGTGATCTGCATGATGCTTCTGCTCTTTGCAAATATCTTGAATCATTCTACACACTACGCAAGCCAGTGGCGTCTACAATAAACACATTAGCAGATGCATTATACAAAGTGTTTTGTGCATCCCCTGACCCAGCAAGGAAGGAAATGCGTCAAgcttgttttgattatttaagtCTTGGAGGTGTTTTCTCAGATGGACCAATATCTCTACTCTCTGGTCTGAATCCTCGTCCGTTGAGCTTGGTTCTCCATTTCTTTGCAGTGGCTGTATATGGTGTTGGCCGTTTATTGATACCATTTCCATCTCCAAAGCGCCTTTTGCTTGGAGTTAGATTACTTTCAGGTGCAGGAGGCATCATTTTCCCCATTATCAAAGCTGAAGGAGTGAGACAAATGTTCTTCCCAATTACAGTCCCAGCATATTACAGAACTGCTCCTGTTCATTA 1574 0.4238 MDCHYILGGILASALAFVFALNSFAEKKNKNSKCSIHVKSNGFSKISEDGLSPPEVPGSTDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLNEPDRIVGELLQPGGFLKLLELGLEDCVDEIDSQRVFGYALYKDGKNAKLAYPLEKFDSDVSGRSFHNGRFIQRMREKAASLPNVKLEQGTVTSLLEENGTIKGVHYKTKSEQELTAKASLTIVCDGCFSNLRRSLCDPNVDVPSHFVGLVLENCNLPYENHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSIAKGEMASYLKTVVAPQVPPELYTAFVAAIDKGNIRTMPNRSMPASPHPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLHDASALCKYLESFYTLRKPVASTINTLADALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPISLLSGLNPRPLSLVLHFFAVAVYGVGRLLIPFPSPKRLLLGVRLLSGAGGIIFPIIKAEGVRQMFFPITVPAYYRTAPVH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00976 524 Gene3D - 53 414 IPR036188 -
Bva13g00976 524 Pfam Squalene epoxidase 210 482 IPR013698 GO:0004506|GO:0016021|GO:0050660
Bva13g00976 524 SUPERFAMILY FAD/NAD(P)-binding domain 60 435 IPR036188 -
Bva13g00976 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Bva13g00976 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Bva13g00976 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Bva13g00976 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Bva13g00976 524 PANTHER SQUALENE MONOOXYGENASE 1 524 IPR040125 GO:0004506|GO:0016126
Bva13g00976 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Bva13g00976 524 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00976 Bva-Chr13 4700418 4703313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00976 61 522 Miscellaneous Gene Families AT1G58440 82.684 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00976 K00511 - gmx:100808856 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00976 13 4700418 4703313 Bva14g01151 14 5602864 5607054 BWGD
Bva13g00976 13 4700418 4703313 Bva13g00976 13 4700418 4703313 ECH