Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00424 ATGGCTCTCCTCCTCAAAACCTTGCCTTTGTTATCCCTCCGCCCTAAGCCATCCTTCATTTTGCTCTGCAGCATTTCCACCTCCGTCCCAAGAGCACTTAACAAAGCCAGAACTGTTTTTTCTGTATCTGCTTCCTTATCACCTTCAATACAGCCACCTCCTTCTTCTGTTTCTGAAACACTCGCCTCCAGTACTAGACCACCTTTACCCTTCGAGGACTCTCTTGAATGGGTTACTAGGACTGCTTTTTGTGGTGAATTGTCTTCAAACGATGTGGGTAAAAGGGTTCGGCTTTGTGGCTGGGTTGCTCTTCACAGGGTCCATGGTGGCCTTACATTTCTTAATCTCAGAGACCATACTGGTATTGTTCAGGTTACGACCCTCCCAGACGAATTTCCTGATGCCCATTCCACTGTCAATAACCTGAGACTTGAGTATGTGGTTGCAGTTGAAGGTATTGTACGGTCTCGGCCAAACGAATCagtcaacaaaaaaatgaaaactggCTTCATTGAGGTTGCTGCAGAGAGtgttcaaatattaaattctgtAAAATCTAAGTTGCCATTTCTAGTTACTACAGCTGATGATGCAAAAGATTCTCTTAAAGAAGAAATCCGTTTGAGGTACCGTTTTCTTGACCTAAGGCGGCAGCAAATGAATTTGAACATATTGCTGCGGCATAATGTGGTTAAACTCATTCGGAGATATCTAGAAGACAGACATGGTTTTGTAGAGATTGAAACTCCAATACTGTCTAGATCCACTCCAGAAGGTGCACGAGATTATTTAGTTCCTTCTAGAATTCAGCCAGGAACATTCTATGCCTTGCCTCAAAGTCCACAGCTATTCAAACAAATGCTCATGGTAGCTGGTTTTGATAAATACTATCAAATAGCAAGATGTTTTCGTGATGAAGATTTAAGAGCTGATAGACAACCTGAGTTCACACAGCTTGATATGGAAATGGCTTTTACTCCTTTAGAGGACATGTTGAGACTTAATGAAGATTTGATCAGAAAGGTTTTTCTAGAAATTAAAGGCTTTGAATTACCAAACCCCTTTCCCAGGCTCACATATGCTGAAGCAATGAACCGATATGGTTCTGACAGGCCAGATACCAGATTTGATCTCGAGTTAAAAGATGTATCTGGCATATTCTCTGGGTCTTCCTTCAGGCTTTTTTCTGACACCTTGGAAAGTGGGGGAATTATCAAAGTGTTATGTGTACCTTCTGGTGCAAAACATTACTCAAATTCGGCACTTAAAAAAGGTGATATTTACAGTGAAGCAGTCAAATCTGGAGGAAAGGGTTTACCTTTCCTTAAGGTTTTGGATAATGGGGAGATTGAGGGAATCACTGCGTTAGTATCAAGTGTGGATTCTACaagtaaagataaatttttgagGCAGTGCTCTGCAGGACCAGGTGATCTTATCCTCTTTGCAGTGGGTAATCATGCATCAGTAAATAAAACTCTGGACCGCCTTAGAGGTTATGTAGCCCATGACCTAGGTTTGATTGACCATTGCAGGCATTCAATTCTATGGATTACTGATTTTCCAATGTTTGAGTGGAATGATTCAGAGAATAGACTTGAGGCTTTGCACCATCCTTTCACTGCCCCAAACCCTGAAGACATGAATGATCTAGCATCTGCCCGTGCCTTGGCTTATGACATGGTTTACAACGGGGTAGAGATTGGTGGGGGAAGTCTAAGAATTTATAAACGTGACATACAACAAAAGGTTTTGGAGATTGTTGGCATTTCAATGGAGCAGGCCGAAGCAAAGTTTGGTTATCTTCTTGAAGCCCTGGACATGGGGGCTCCACCACATGGGGGAATTGCTTATGGACTGGACAGATTGACTATGTTGTTGGCGGGGGCTAATTCCATCAGGGATGTCATTGCTTTCCCCAAAACCACGACTGCCCAGTGTGCCCTCACAAGGGCTCCATCAGAGGTCGATCCCCAGCAGCTGAAAGATTTATCACTTACACAGTA 2006 0.4202 MALLLKTLPLLSLRPKPSFILLCSISTSVPRALNKARTVFSVSASLSPSIQPPPSSVSETLASSTRPPLPFEDSLEWVTRTAFCGELSSNDVGKRVRLCGWVALHRVHGGLTFLNLRDHTGIVQVTTLPDEFPDAHSTVNNLRLEYVVAVEGIVRSRPNESVNKKMKTGFIEVAAESVQILNSVKSKLPFLVTTADDAKDSLKEEIRLRYRFLDLRRQQMNLNILLRHNVVKLIRRYLEDRHGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFKQMLMVAGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFTPLEDMLRLNEDLIRKVFLEIKGFELPNPFPRLTYAEAMNRYGSDRPDTRFDLELKDVSGIFSGSSFRLFSDTLESGGIIKVLCVPSGAKHYSNSALKKGDIYSEAVKSGGKGLPFLKVLDNGEIEGITALVSSVDSTSKDKFLRQCSAGPGDLILFAVGNHASVNKTLDRLRGYVAHDLGLIDHCRHSILWITDFPMFEWNDSENRLEALHHPFTAPNPEDMNDLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVLEIVGISMEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLTMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDPQQLKDLSLTQ 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00424 668 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 226 640 IPR006195 -
Bva13g00424 668 SUPERFAMILY Class II aaRS and biotin synthetases 200 666 IPR045864 -
Bva13g00424 668 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 79 668 IPR004524 GO:0005524|GO:0016874
Bva13g00424 668 TIGRFAM aspS_bact: aspartate--tRNA ligase 79 666 IPR004524 GO:0005524|GO:0016874
Bva13g00424 668 Pfam GAD domain 395 494 IPR029351 -
Bva13g00424 668 PRINTS Aspartyl-tRNA synthetase signature 603 617 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva13g00424 668 PRINTS Aspartyl-tRNA synthetase signature 559 575 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva13g00424 668 PRINTS Aspartyl-tRNA synthetase signature 294 307 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva13g00424 668 PRINTS Aspartyl-tRNA synthetase signature 277 289 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva13g00424 668 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 67 667 IPR004524 GO:0005524|GO:0016874
Bva13g00424 668 CDD AspRS_core 224 643 - -
Bva13g00424 668 CDD EcAspRS_like_N 80 220 - -
Bva13g00424 668 Gene3D - 359 508 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bva13g00424 668 Gene3D Bira Bifunctional Protein; Domain 2 198 665 IPR045864 -
Bva13g00424 668 MobiDBLite consensus disorder prediction 45 65 - -
Bva13g00424 668 Gene3D - 72 184 IPR012340 -
Bva13g00424 668 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 67 667 - -
Bva13g00424 668 Pfam OB-fold nucleic acid binding domain 96 181 IPR004365 GO:0003676
Bva13g00424 668 SUPERFAMILY Nucleic acid-binding proteins 80 182 IPR012340 -
Bva13g00424 668 SUPERFAMILY GAD domain-like 376 508 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bva13g00424 668 Pfam tRNA synthetases class II (D, K and N) 204 643 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00424 Bva-Chr13 1961540 1966809 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00424 K01876 - gmx:100803308 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00424 13 1961540 1966809 Bva13g00424 13 1961540 1966809 ECH