Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00399 ATGATCCCTACGgTAGGATTTAATATGAGAAAGGTAAATAAAGGAAGTGTGACCATAAAGTTATGGGATCTTGGAGGCCAACCAAGGTTTCGCAGTATGTGGGAGAGATACTGCCGTGCTGTTTCAGTTATTGTTTATGTTGTTGATGCAGCTGATTATGACAATTTGCCAGTTTCTAAAGGTGAACTTCATGACTTGTTGAGCAAGCCTGCTTTAAATGGGATTCCGCTGCTGGTACTGGGTAATAAGATTGACAAACCAGGAGCTTTGTCTAAGGAAGAATTGACTGAGCAGATGGGGCTCAAATCTATTGCAAATAGAGAAGTTTGTTGTTTCATGATCTCATGCAAAAACTCCACCAACGTTGATACAGTTGTTGATTGGCTCGTAAAGCACTCAAAATCAAAGAATTG 413 0.3995 MIPTVGFNMRKVNKGSVTIKLWDLGGQPRFRSMWERYCRAVSVIVYVVDAADYDNLPVSKGELHDLLSKPALNGIPLLVLGNKIDKPGALSKEELTEQMGLKSIANREVCCFMISCKNSTNVDTVVDWLVKHSKSKN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00399 137 SMART rab_sub_5 2 136 - -
Bva13g00399 137 CDD Arl10_like 1 132 IPR044154 GO:0003924|GO:0005525|GO:0015031
Bva13g00399 137 SMART arf_sub_2 1 137 - -
Bva13g00399 137 Pfam ADP-ribosylation factor family 1 131 IPR006689 GO:0003924|GO:0005525
Bva13g00399 137 TIGRFAM small_GTP: small GTP-binding protein domain 7 129 IPR005225 GO:0005525
Bva13g00399 137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 135 IPR027417 -
Bva13g00399 137 ProSiteProfiles small GTPase Arf family profile. 1 133 - -
Bva13g00399 137 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 137 - -
Bva13g00399 137 Gene3D - 1 137 IPR027417 -
Bva13g00399 137 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 1 137 - -
Bva13g00399 137 ProSiteProfiles small GTPase Rab1 family profile. 1 137 - -
Bva13g00399 137 PRINTS GTP-binding SAR1 protein signature 30 55 IPR006689 GO:0003924|GO:0005525
Bva13g00399 137 PRINTS GTP-binding SAR1 protein signature 75 96 IPR006689 GO:0003924|GO:0005525
Bva13g00399 137 PRINTS GTP-binding SAR1 protein signature 3 27 IPR006689 GO:0003924|GO:0005525
Bva13g00399 137 SMART sar_sub_1 1 133 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00399 Bva-Chr13 1844324 1847019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00399 19 99 Miscellaneous Gene Families AT5G05670 32.143 4.47e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00399 K07955 - jre:108979721 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00399 13 1844324 1847019 Bva13g00399 13 1844324 1847019 ECH