Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00392 ATGAGTCTCCTTCTTCTGTTGTGTCTCATTTTTCTATCAGGGTCTGAAGCCAAAGTTTCATCATATGATTACAGTGCCAGCATTCAATGTTTAGCGAACCCTCAAAAGGCTCAGTATGGTGGGGGAATCATCAAGAACCCAGAATTGAATGATGGATTGCAAGGCTGGACTGCATTTGGGGATGCAAGAATAGAGCATAGAGAGTCAAGAGgcaacaaatatattatatccCATAGCAGAAACCAACCCCATGACAGTGTCTCTCAGAAGATTTACCTGCAAAAGAACAAGCTCTATTCATTATCTGCTTGGATACAAGTGAGTGAGGCAAAAGTTCCAGTAACAGCAGTTTTCAAAACAATCAAAGGATTCAAACATGCTGGGGCTATCATTGCTGAATCTAATTGCTGGTCCATGCTTAAGGGTGGCCTTACAGTTGATGCATCGGGACCAGCTGAGCTTTATTTTGAGAGCAATATCACATCTGTGGAGATATGGCTTGACAGCATATCTTTACAGCCTTTCACACCACAAGAATGGAGGTCTCATCAAGATCAAAGCATTGAGAAGACACGCAAGAAAAGAGTGGTAGTCCAAGCAGTTGATGGGCAAGGGAATCCCTTACCCAATGCAAGCATTTCTATTGAACAGAAAGGGGGAAGCTTTCCTTTTGGAAGTGCCATAAACAAGAACATCCTCAACAATGCTGCATATCAGAACTGGTTCACCTCAAGGTTTACCGTCACAACATTTGAGAATGAAATGAAGTGGGACAGCACTGAAAAGACACAGGGCGAAGAGGACTACTCAATTGCTGACAGCATGCTGCAATTCGCCAAGCAACATGGTATCGCTGTTCGAGGCCACAATGTCTTCTGGGATGATCCTCATTACCAACCTAGTTGGGTTCCTTCACTCTCACCAGATCAAATTAACTCAGCGATTGAAAAAAGGATAAATTCGGTTGTGTCAAGATACAAGGGCCAACTGATTGCTTGGGATGTCGTCAATGAAAATCTGCATTTTTCATTCTTGGAAAGCAAGCTTGGACAAAATGCTTCAGGAAAGATTTACAATGCGGTTCAAAAAATTGATGGACAAACAACTTTGTTCCTAAATGAATATAATACCATTGAGGATAGTAGAGATGGTTCATCAACCCCAACAAAGTACCTTAACAAGCTTAGAGAAATCCAAAGCTATACAGGGAATAATGGAATGCAGATTGGAATTGGGCTTGAATCCCATTTCTCTACTCCTAATTTGCCTTACATGAGAGCTTCTATTGACACTCTTGCAGCCACAGGTTCACCAATTTGGTTGACTGAATTGGATGTTACCAGCCAACCCAGACAGGCAGAGTACTTGGAACAGATTCTAAGAGAAGCACACTCCCACCCAAAGGTTCAGGGCATTGTAATGTGGACAGCATGGAATCCTGGGGGTTGTTACACAATGTGCATAACTGATAACAATTTCAGAAACTTGCCTACAGGGAATGTTGTGGACAAGTTACTGAAAGAATGGGGTTTCACAAGATTGGCAGGGACaacagaccaaaatgggacCTTTGAGGCTTCTCTGTTTCATGGCGATTATCAAGTGACAATCGGTCACCCTGTTATCAAGAATTTCACATTAGATCAGCATTTGCAAGTGATACCAACAGATGAACCTAAGCAAACGACTATTCGTCTTCAAGTCTCTGCTTA 1712 0.4141 MSLLLLLCLIFLSGSEAKVSSYDYSASIQCLANPQKAQYGGGIIKNPELNDGLQGWTAFGDARIEHRESRGNKYIISHSRNQPHDSVSQKIYLQKNKLYSLSAWIQVSEAKVPVTAVFKTIKGFKHAGAIIAESNCWSMLKGGLTVDASGPAELYFESNITSVEIWLDSISLQPFTPQEWRSHQDQSIEKTRKKRVVVQAVDGQGNPLPNASISIEQKGGSFPFGSAINKNILNNAAYQNWFTSRFTVTTFENEMKWDSTEKTQGEEDYSIADSMLQFAKQHGIAVRGHNVFWDDPHYQPSWVPSLSPDQINSAIEKRINSVVSRYKGQLIAWDVVNENLHFSFLESKLGQNASGKIYNAVQKIDGQTTLFLNEYNTIEDSRDGSSTPTKYLNKLREIQSYTGNNGMQIGIGLESHFSTPNLPYMRASIDTLAATGSPIWLTELDVTSQPRQAEYLEQILREAHSHPKVQGIVMWTAWNPGGCYTMCITDNNFRNLPTGNVVDKLLKEWGFTRLAGTTDQNGTFEASLFHGDYQVTIGHPVIKNFTLDQHLQVIPTDEPKQTTIRLQVSA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00392 570 Gene3D Glycosidases 211 514 - -
Bva13g00392 570 SMART glyco_10 255 506 IPR001000 GO:0004553|GO:0005975
Bva13g00392 570 Pfam Glycosyl hydrolase family 10 221 476 IPR001000 GO:0004553|GO:0005975
Bva13g00392 570 Gene3D - 31 175 - -
Bva13g00392 570 PANTHER GLYCOSYL HYDROLASE 4 543 IPR044846 GO:0004553|GO:0005975
Bva13g00392 570 Pfam Carbohydrate binding domain 42 147 IPR003305 GO:0016798
Bva13g00392 570 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 209 505 IPR001000 GO:0004553|GO:0005975
Bva13g00392 570 SUPERFAMILY (Trans)glycosidases 206 512 IPR017853 -
Bva13g00392 570 SUPERFAMILY Galactose-binding domain-like 40 173 IPR008979 -
Bva13g00392 570 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE 4 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00392 Bva-Chr13 1818627 1822064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00392 13 547 Glycoside Hydrolase AT4G33840 60.405 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00392 - - gmx:100775272 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00392 13 1818627 1822064 Bva13g00392 13 1818627 1822064 ECH