Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00389 ATGGAGGAAAGCGAAACAGCCATGGATAGTGCCCGGCCATGGCAATCTTACCATACTGTTTACACAAACGCCAAAGCAGGAATGGATGGAGTTGACAAGGAGAAAGTTCAGAGGATAGTGTATGAAATGAGCAGAGGATCCAAGTATTTCGAGAACGAGGAACGCAAGGAAGCTTTTATTAGGCAGAAAGTAGAGAACTTGCGAACTCAGTCTGCAAAGCTTACAGCAGCAGATATATCCCACTTTCAGAAGGTGGCAGATAAAAGAATCCTTGAGCTAGAAGCTACACGTGACCTGTCAAGGGTATGGTTACATGTAGACATGGATGCTTTCTATGCAGCAGTTGAAACTTTAAGTAACCCTTCATTAAAGGGAAAACCGATGGCTGTTGGTGGCATGTCTATGATATCCACTGCAAATTATGAGGCTCGGAAATTTGGGGTTCGTGCTGCAATGCCTGGATTCATTGCACGTAAACTATGTcctgaattaatttttgtccCAACGGATTTTAGAAAGTATACTCATTACAGTGATTTAACCAGAAAAGTTTTCCATAGGTATGATCAGAATTTCATGGCTGCTAGCCTGGATGAAGCTTACCTTGATATTACTGAGGTTTGCAAGCAAAGGGCCATCACAAGTGGAGAAGTTGCTGAAGAACTCAGAGCCAGTGTTTATGAAGAAACTGGTCTCACATGTAGTGCTGGAGTGGCACCGAATCGTTTACTTGCTAAGGTTTGTTCGGATATAAACAAGCCAAATGGGCAGTTTGTTTTACCAAACAACCGCATGGCTGTTGTGACATTTGTATCCTCCCTTCCTATTCGAAAGATTGGGGGCATTGGTAAGGTCACTGAGCATATATTGAGGGATGCTATTGGAATTCATACGTGTGAGCAGATGCTGCAAAAGGGTAGCTTCATCTGTGCTCTTTTTTCTCAGTCAACAGCAGaattttttctctctgtgGGTTTAGGTCTTGGAAAGACAGACCATCCCCAAGCAAGATTGAGGAAAAGTATTAGTAATGAAAGAACTTTTTCAGCCACTGAGGATGAAGCgcatttatataaaatactagCGGATCTTGCTGAAATGCTGTCTGCAGACATGCAAAAAGAGGGTCTTTGTGGGAGGACATTGACTCTGAAACTGAAAACAGCATCTTTTGAGGTTCGGACTAGAGCGATGACTTTACAAAAGTACATTAGCTCCAGTGAGGATATCTTAAAACATGCTTCAAAGCTGCTAAAAGCTGAACTTCCCATCTCCTTGAGACTGATAGGCCTCCGAGTATCACAGTTCAATGAAGATAAGTTTTTAGCTCCATCTGATCCTACACAGAAAACAATCACCAACTTTATAGCGTCAGCAGATGCAATCAGGAATAGTAGTTCCGTGCTTCCTGATGTTACAGATCATACCCTTGTCAGTGATATAGAAACTGATCTTTCCGATGACCGTCGGCAGACAtgtatttatgattttagagACCGGTTTGATGCTAATCATTCATTCGATGCGGATCAATATAGTTGCACAATCAGAGAAAATCCTGATTTAGACCAGGTGCATTCATTGGTTAAAGAAGTGCCTGGATCagatctctcttctttccagGGACGCGGTAAGGGAAGTAGCCttgaaaatgtaaataatggGTCTAATCACTTGGAAGAAGAGCAATCTAATTCTTATCTGGAGGAGAAGTTATGGTTGAATGACTACAAATGTGCCCTCTGTGGGATAGAACTTCCTCCAAGTTTTGTGGAAGAAAGACAAGAGCATGCCGATTTCCATCTTGCTGAAAAGCTTCAGAAGGAAGAATCTAGCACTGACTTGAGACTAAGAACATCTATGCTGAGTCAAAGTCGGATTCAGAAGGAACTAATCACAAGACGGAGGAAATCCAAGAAGCAAAAGTTGTCCCAGAAGGAAGGCAGATATATTCCCAttgatagttttttttctaagtGCAGTCGAAGCTCGTG 1994 0.4012 MEESETAMDSARPWQSYHTVYTNAKAGMDGVDKEKVQRIVYEMSRGSKYFENEERKEAFIRQKVENLRTQSAKLTAADISHFQKVADKRILELEATRDLSRVWLHVDMDAFYAAVETLSNPSLKGKPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFRKYTHYSDLTRKVFHRYDQNFMAASLDEAYLDITEVCKQRAITSGEVAEELRASVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNNRMAVVTFVSSLPIRKIGGIGKVTEHILRDAIGIHTCEQMLQKGSFICALFSQSTAGLGKTDHPQARLRKSISNERTFSATEDEAHLYKILADLAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAMTLQKYISSSEDILKHASKLLKAELPISLRLIGLRVSQFNEDKFLAPSDPTQKTITNFIASADAIRNSSSVLPDVTDHTLVSDIETDLSDDRRQTCIYDFRDRFDANHSFDADQYSCTIRENPDLDQVHSLVKEVPGSDLSSFQGRGKGSSLENVNNGSNHLEEEQSNSYLEEKLWLNDYKCALCGIELPPSFVEERQEHADFHLAEKLQKEESSTDLRLRTSMLSQSRIQKELITRRRKSKKQKLSQKEGRYIPIDSFFSKCSRSS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00389 656 Pfam impB/mucB/samB family C-terminal domain 331 431 IPR017961 GO:0003684|GO:0006281
Bva13g00389 656 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Bva13g00389 656 Gene3D - 108 258 IPR043128 -
Bva13g00389 656 SUPERFAMILY DNA/RNA polymerases 77 317 IPR043502 -
Bva13g00389 656 MobiDBLite consensus disorder prediction 528 553 - -
Bva13g00389 656 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Bva13g00389 656 Pfam Ubiquitin-Binding Zinc Finger 568 601 IPR041298 -
Bva13g00389 656 Gene3D - 328 433 IPR036775 GO:0003684|GO:0006281
Bva13g00389 656 Gene3D - 21 107 - -
Bva13g00389 656 PIRSF DNA_pol_eta 95 216 - -
Bva13g00389 656 PIRSF DNA_pol_eta 332 653 - -
Bva13g00389 656 PIRSF DNA_pol_eta 212 308 - -
Bva13g00389 656 Gene3D - 120 168 - -
Bva13g00389 656 ProSiteProfiles Zinc finger UBZ3-type profile. 564 601 IPR041298 -
Bva13g00389 656 MobiDBLite consensus disorder prediction 532 553 - -
Bva13g00389 656 PANTHER DNA POLYMERASE KAPPA 7 621 - -
Bva13g00389 656 Gene3D - 259 321 - -
Bva13g00389 656 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 329 426 IPR036775 GO:0003684|GO:0006281
Bva13g00389 656 Hamap DNA polymerase IV [dinB]. 100 444 IPR022880 GO:0003887
Bva13g00389 656 Coils Coil 50 70 - -
Bva13g00389 656 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 621 - -
Bva13g00389 656 CDD PolY_Pol_IV_kappa 104 428 IPR022880 GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00389 Bva-Chr13 1808970 1813658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00389 K03511 - gmx:100816973 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00389 13 1808970 1813658 Bva13g00389 13 1808970 1813658 ECH