Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00386 ATGACAGTCCGATCATTGTTCGACGCCGGCGATATCAGAAGAGAGTTCGAAGACGCGGGGCTTGATCCGAAATTCATTCCCATTATATGGAAGCATGTGATTCAGAATCTAAAGCAAAACAGTGAGTGCCAGGAATGGGACTGGGAGAAACAAGTTCCATCTCTGCCATCAGCAGCTTACTCTTTGCTACGTTCCAAGTTCAAAATGCCCCTCTCTACCTCTGTCCACTCCGTATTTCATTCGTCTGATAACGTCACCTCCAAGCTCCTCATCAAGCTACATAACGGTGCTTTTGTGGAGGCTGTGATAATGAGATATGATACTCGTTTGGGAAAATATGGTGGTAAACCCCGTCCTGGTGGCCTAAGATCAACTTTGTGTATATCATCTCAGGTAGGTTGCAAAATGGGTTGCAAATTTTGTGCAACTGGAAGTATgggatttaaaaataacttgtcATCTGGAGAAATAGTGGAACAATTGATTCACGCGTCTTCTTTATCGGAAATTCGTAATATTGTCTTCATGGGAATGGGGGAGCCTCTGAACAACTATTCTGCCTTGGTTGAATCTGTTCGTGTCATGACTGGATCACCATTTCAACTGTCTTTGAGAAGGATCACTGTCTCAACGGTTGGCATCATCCATGCTATCAACAAGCTTCATAATGATCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCTCCTGTGCAAGACATCCGTTGCAAGATAATGCCTTCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGAATGCACTACAAGAATATCAAAGGAACAGTGAgcaaaaaatcttaattgagTATATAATGCTTGATGGGGTGAATGATGAAGAGCAACAAGCCCACCAACTAGGGAAACTACTAGAGACATTTCAAGTGGTGGTGAACTTAATTCCTTTCAACCCTATTGGTACCTTGAGTCAATTCAAAACCAGTAACGAGCAGAAAGTATCAAGATTTCAGAAAATTTTGAGGGGCACCTATAATATTCGAACGACCGTCCGAAAGCAAATGGGTCAGGACATAAGCGGTGCATGTGGGCAATTAGTGGTAAACCAGCCTGATAAGAATTTTCTTCAGAATGCTGGTTCCATGACTGATATAGAAGATCTTGTTATGTA 1145 0.4148 MTVRSLFDAGDIRREFEDAGLDPKFIPIIWKHVIQNLKQNSECQEWDWEKQVPSLPSAAYSLLRSKFKMPLSTSVHSVFHSSDNVTSKLLIKLHNGAFVEAVIMRYDTRLGKYGGKPRPGGLRSTLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLIHASSLSEIRNIVFMGMGEPLNNYSALVESVRVMTGSPFQLSLRRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPVQDIRCKIMPSARAFPLEKLMNALQEYQRNSEQKILIEYIMLDGVNDEEQQAHQLGKLLETFQVVVNLIPFNPIGTLSQFKTSNEQKVSRFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNQPDKNFLQNAGSMTDIEDLVM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00386 381 Coils Coil 254 274 - -
Bva13g00386 381 ProSiteProfiles Radical SAM core domain profile. 120 349 IPR007197 GO:0003824|GO:0051536
Bva13g00386 381 SUPERFAMILY Radical SAM enzymes 124 308 - -
Bva13g00386 381 Pfam 4Fe-4S single cluster domain 133 216 - -
Bva13g00386 381 PANTHER 23S RRNA METHYLTRANSFERASE 2 376 IPR040072 -
Bva13g00386 381 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 2 376 - -
Bva13g00386 381 PIRSF Cfr 11 374 IPR004383 GO:0006364|GO:0008173
Bva13g00386 381 SFLD adenosine C2 methyltransferase (RlmN-like) 51 364 IPR004383 GO:0006364|GO:0008173
Bva13g00386 381 CDD Radical_SAM 133 334 - -
Bva13g00386 381 Pfam Radical SAM superfamily 129 287 IPR007197 GO:0003824|GO:0051536
Bva13g00386 381 Gene3D Aldolase class I 63 364 IPR013785 -
Bva13g00386 381 SFLD methyltransferase (Class A) 51 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00386 Bva-Chr13 1801206 1804227 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00386 - - ccaj:109814608 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00386 13 1801206 1804227 Bva13g00386 13 1801206 1804227 ECH