Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00344 ATGGCGGGGCCAATAGTCCTTCGTATTACCAGCCTCGTATCGCCGACAACCACTTGTTCTAGTCATGTCTTCTTAAGACTATGTTTCTCAACCTTCAGCTCGTGGAAGTTTCGTTACTGCTCCTATGCCACTGAAAACTTAAATGAAGCCAGAAGGCAGATAAAAAATGGGAGATGGCTAGCTCTGCCGCCTTTTACTACTACTGTGAATGGCTCTGCTCTCGGAAAAGAACTCTCTGGTCGCCGTTCTCATGTTAGTTGCGGCTCTGCAGCTACCCCCGCAACCACAACTACTGCGCTCAAATGGGTTCTTCGGTGCTGCCCCGACCTACCCAGAAGCCTTGTGCAGAAGCTCTTTCGCCTTAGAAAGGTCCGAAGAGAATCTACTTCCGTGGACGATAACAGTATAGAAGTTCACGCGCATGAGCATAGACTCAAAAGGgTTGCAGCTAAGGATACTTTGAACTCAGGAGATCGGATATTTCTCCCTGTTGCTGTTAAAGAAACGCTAGCAGAGAAACCTAAGTATGACATCACTGCAAAAGAAATGGACTTTATCCATAGGCTTGTATTGTACAAGGATCCTGCAATTCTTGTTCTGAACAAACCTCCAGGAATGCCTGTGCAGGGTGGCATTAATGTCAGGCAAAGTCTAGATGAAGTAGCTGCGACGTGTCTGAGTTATGAATACTCCGAAACCCCTCGTCTGGTGCACAGACTTGATAGGGACTGCTCTGGCATTCTAGTGATGGGGAGGACACAGACAAGTGCTACGGTTCTGCATTCCCTATTCAGGGAGAAAACTTCTAGGGCATCAGATGAGATTGGCAAGGAAAAGCGAATCCTTCAAAGAAGGTACTGGGCACTGGTAATTGGATGTCCAAGACGCCTAAGGGGGTTGGTCACCGCTCCACTTGGTAAGGTGGTCATCGACAATGGGAAATCTGATCGAATTACTATCATTGACAATTCTGAAGTGTTGCCATCACAGCATGCAATTACGGAATACCAAGTAATTGGATCGTCTTCACATGGTTTCACATGGTTGGAGCTGTCCCCTTTAACTGGTAGAAAGCATCAGCTTCGTGTCCACTGTGCTGAGATGTTAGGAACACCAATAGTTGGGGATTACAGATATGGATGGCAAGCTCATAGGAAGTGGAAACCTTTAGATTGGCCTCATGTGGTGGGCTCAAGGGAGGAGCTTCTCAAGGAAGACTCACTCCCCTTTGGCCTTAATCTGGACAAGGGGAGTATCTCTGAGGTACACCCTCGCTTGCACCTTCACTGTAAGCAAATAGTGTTGCCCAACATTTCTCAGGCTCTTCAACAAGTGCAATCAGCTTCCAACTATGATCTTTCACAAGTGGAAAGCCTTGAGCTGGTTGCGCCTTTGCCTCCATACATGCAAAGAAGTTGGGATATCATGAATTCATG 1436 0.4701 MAGPIVLRITSLVSPTTTCSSHVFLRLCFSTFSSWKFRYCSYATENLNEARRQIKNGRWLALPPFTTTVNGSALGKELSGRRSHVSCGSAATPATTTTALKWVLRCCPDLPRSLVQKLFRLRKVRRESTSVDDNSIEVHAHEHRLKRVAAKDTLNSGDRIFLPVAVKETLAEKPKYDITAKEMDFIHRLVLYKDPAILVLNKPPGMPVQGGINVRQSLDEVAATCLSYEYSETPRLVHRLDRDCSGILVMGRTQTSATVLHSLFREKTSRASDEIGKEKRILQRRYWALVIGCPRRLRGLVTAPLGKVVIDNGKSDRITIIDNSEVLPSQHAITEYQVIGSSSHGFTWLELSPLTGRKHQLRVHCAEMLGTPIVGDYRYGWQAHRKWKPLDWPHVVGSREELLKEDSLPFGLNLDKGSISEVHPRLHLHCKQIVLPNISQALQQVQSASNYDLSQVESLELVAPLPPYMQRSWDIMNS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00344 478 SUPERFAMILY Pseudouridine synthase 186 475 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva13g00344 478 CDD PseudoU_synth_RluA_like 197 389 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva13g00344 478 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 46 476 - -
Bva13g00344 478 Pfam RNA pseudouridylate synthase 197 366 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva13g00344 478 Gene3D Pseudouridine synthase 180 448 - -
Bva13g00344 478 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 46 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00344 Bva-Chr13 1608854 1613489 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00344 - - qsu:112035965 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00344 13 1608854 1613489 Bva13g00344 13 1608854 1613489 ECH