Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00333 ATGGCAACCACAGCTTCCCAAACCCTCCGAACCCCATCGATCAGGAACCcatcactctctctctcttccaagCTCCCTCTTTCCTCTGCCTTTTCTGTGTCTTTCCGGCCCTGCCGTGGCCGAGCGACTCGGCCTCTTGTGGTGGTGGTCTCAGCGGGCTTGGACGCCAAGCCCACCATCCTTGTAGCTGAGAAGCTCGGTGAAGCTGGGCTTGAGTTGCTAAAGGACTTCGCCAATGTTGATTGCTCTTATAATTTGAGCCCAGAGGAGCTCTGCACCAAGATCTCGCTATGTGACGCATTGATTGTGCGTAGTGGGACTAAGGTGAACCGTGAGGTCTTCGAGTCTTCCGGTGGAAGGCTTAAGGTGGTTGGCAGAGCCGGTGTTGGAATCGATAATGTGGATCTGGCGGCGGCTACTGAGCATGGATGTTTGGTGGTTAATGCTCCCACGGCAAACACAGTGGCAGCAGCTGAACATGGGATCGCACTCTTGGCTGCCATGGCTAGGAACGTTGCTCAAGCTGATGCATCAGTAAAAGCTGGGAAATGGCAACGAAATAAGTATGTAGGTGTATCCCTTGTGGGGAAAACACTTGCTGTCATGGGATTTGGGAAGGTTGGTTCTGAAGTGGCTCGCCGTGCCAAGGGGCTTGGTATGCATGTCATCGCACATGACCCCTATGCCCCTGCAGACCGTGCTCGAGCAATTGGTGTAGAGCTTGTTAGTTTTGATGAGGCCATCGCTACTGCTGATTTTATCTCTTTGCACATGCCTCTAACTCCTGCTACGTCAAAGATTCTCAATGACGACACGTTCGCTAAGATGAAAAAAGGAGTCAGAATAGTCAACGTTGCTCGTGGTGGAGTCATTGATGAGGAGGCTCTTGTGAGGGCACTAGATGCTGGAATTGTTGCTCAGGCGGCCCTTGATGTTTTCACAGAGGAGCCACCTGCAAAGGACAGCAAATTGGTTCAGCATGAGAAAGTCACTGCAACACCTCATTTGGGTGCTAGTACCTTGGAAGCTCAGGAAGGCGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCGTTGAAAGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCTGCTGAGGTTCTAACAGAGCTGAAACCATTTGTTGATCTTGCCGAGAGACTGGGAAGATTTGCTGTCCAGTTGGTAGCAGGAGGAAGTGGTATGAAAACAGTAAAAGTTACTTATGCTTCCTCAAGAGCTCCTGATGATCTTGACACTCGCCTTCTCCGTGCCATGATAACCAAGGGTCTCATTGAACCTATCTCCAGTGTGTTTGTGAATCTTGTCAATGCTGACTTCACTGCTAAACAGAGAGGGCTCAGAATAACTGAGGAAAAAGTTATTCTCGATGGTTCGCCTGAGAATCCACTTGAATTCATCCAAGTCCAGATTGCTAATGTGGAGTCTAGATTTGCTAGTGCCATATCAGAATCTGGGGAGATTAAAGTTGAAGGCCGCGTGAAAGATGGAGTGCCTCATCTGACAAAGGTAGGATCTTTTGAGGTTGACGTGAGCTTGGAAGGTAGCATTATACTCTGCAGGCAGGTGGATCAACCGGGCATGATAGGAACGGTTGGCAGCATTTTGGGTCAGGAAAATGTCAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCGCGTAAGCAAGCTGTCATGGCAATTGGGGTTGATGAACAACCAAGCAAAGAAACTCTAAGGAAGATTGGTGAGATTCCTGCAGTTGAAGAATTCGTTTTCCTTAAGTTGTA 1799 0.4864 MATTASQTLRTPSIRNPSLSLSSKLPLSSAFSVSFRPCRGRATRPLVVVVSAGLDAKPTILVAEKLGEAGLELLKDFANVDCSYNLSPEELCTKISLCDALIVRSGTKVNREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIATADFISLHMPLTPATSKILNDDTFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPAKDSKLVQHEKVTATPHLGASTLEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVDLAERLGRFAVQLVAGGSGMKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEEKVILDGSPENPLEFIQVQIANVESRFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGQENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKETLRKIGEIPAVEEFVFLKL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00333 599 SMART AdoHcyase_NAD_2 187 356 IPR015878 -
Bva13g00333 599 CDD PGDH_4 60 362 - -
Bva13g00333 599 SUPERFAMILY Serine metabolism enzymes domain 375 521 IPR029009 -
Bva13g00333 599 MobiDBLite consensus disorder prediction 1 20 - -
Bva13g00333 599 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 380 485 IPR045626 -
Bva13g00333 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 IPR029753 -
Bva13g00333 599 Gene3D - 153 335 - -
Bva13g00333 599 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 27 594 - -
Bva13g00333 599 Gene3D - 526 599 - -
Bva13g00333 599 PANTHER FORMATE DEHYDROGENASE 1 27 594 - -
Bva13g00333 599 TIGRFAM PGDH: phosphoglycerate dehydrogenase 60 597 IPR006236 GO:0004617|GO:0006564
Bva13g00333 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 337 IPR006140 GO:0051287
Bva13g00333 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 IPR029753 -
Bva13g00333 599 Gene3D - 62 362 - -
Bva13g00333 599 Pfam ACT domain 527 588 IPR002912 -
Bva13g00333 599 Gene3D - 373 525 IPR029009 -
Bva13g00333 599 SUPERFAMILY ACT-like 517 596 IPR045865 -
Bva13g00333 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 338 IPR036291 -
Bva13g00333 599 CDD ACT_3PGDH-xct 528 599 - -
Bva13g00333 599 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 57 190 - -
Bva13g00333 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 199 226 IPR029752 -
Bva13g00333 599 ProSiteProfiles ACT domain profile. 527 599 IPR002912 -
Bva13g00333 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 60 369 IPR006139 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00333 Bva-Chr13 1564092 1567278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00333 K00058 - csv:101221689 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00333 13 1564092 1567278 Bva13g00333 13 1564092 1567278 ECH