Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00289 atgtcaagcacaaGTTTCCTTGATTTTCAGTACAGCCTCTCAAAGAAGAAGTACCTGAGGAAGCCATCTCGCCTGTTTTCTGCCCGGGACAGAAGCGACTCTGGATTGAAGCCTATTTTCCAGCCCAACGTCGATGAGATGAAGCAGGTGTTTGACAAATTTGATTCCAACAAAGATGGGAAAATTTCTCAGCAGGAGTACAAAGCCACCCTGAGAGCACTGGGAATGGTGGACATGGTTAATGAAGTGCCAAACATTTTTCGGGTAGTTGATCTGGATGGAGATGGATTCATCAATTTCAAAGAATTCATGGAAGCTCAGAAGAAGGGAGGAGGGATAAGGACCATGGATATACAGAGCGCATTTCGGACATTTGATCGGAACGGTGACGGCAAAATAAGTGCAGAAGAGATTCAGGAAATGCTAAGGAGGTTGGGGGAAAGGTGTAGCCTTGACGATTGTCGAAGAATGGTGCAAGCAGTGGACACTGATGGAGATGGCATGGTTGACATGGACGAGTTCATGACCATGATGACTAGGACCATGAGACATGTTTG 557 0.4506 MSSTSFLDFQYSLSKKKYLRKPSRLFSARDRSDSGLKPIFQPNVDEMKQVFDKFDSNKDGKISQQEYKATLRALGMVDMVNEVPNIFRVVDLDGDGFINFKEFMEAQKKGGGIRTMDIQSAFRTFDRNGDGKISAEEIQEMLRRLGERCSLDDCRRMVQAVDTDGDGMVDMDEFMTMMTRTMRHV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00289 185 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Bva13g00289 185 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Bva13g00289 185 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Bva13g00289 185 SMART efh_1 82 110 IPR002048 GO:0005509
Bva13g00289 185 SMART efh_1 46 74 IPR002048 GO:0005509
Bva13g00289 185 SMART efh_1 117 145 IPR002048 GO:0005509
Bva13g00289 185 SMART efh_1 153 181 IPR002048 GO:0005509
Bva13g00289 185 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Bva13g00289 185 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 1 183 - -
Bva13g00289 185 SUPERFAMILY EF-hand 44 180 IPR011992 -
Bva13g00289 185 Gene3D - 3 111 - -
Bva13g00289 185 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Bva13g00289 185 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Bva13g00289 185 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 183 - -
Bva13g00289 185 Pfam EF-hand domain pair 46 106 IPR002048 GO:0005509
Bva13g00289 185 Pfam EF-hand domain pair 117 178 IPR002048 GO:0005509
Bva13g00289 185 CDD EFh 117 179 IPR002048 GO:0005509
Bva13g00289 185 ProSiteProfiles EF-hand calcium-binding domain profile. 78 112 IPR002048 GO:0005509
Bva13g00289 185 Gene3D - 114 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00289 Bva-Chr13 1358141 1359029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00289 117 181 EF-hand Containing Proteins AT2G15680 38.462 4.84e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00289 K13448 - gmx:100803158 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00289 13 1358141 1359029 Bva13g00289 13 1358141 1359029 ECH