Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00270 atgGCACAGGCACAGCCGGAGGAGAAAACCCACGAGAACCCAGGATTAAAGGATACCAAGGAACCCGCCAATGCTTCCTTCAAATTCAATGCCCAAGCACCTGAATTTGTCCCAAGATCGCAGACCCAGATACCCATATCGGGTTATTTCTATCCCTGCTTCCAGATTCTTGGTGGTGCTGGTGGTTCTGATTGGTTTTATGTTAGCGACCAGGATCCTACTTGCTTAATACCTGGTACCAATGTGGCACTCCCCAATTGCTCGAAGAATATACTCACTAACGATCTTCAGCAAAAGATCGTCAAACAGGTGGAGTATCAGTTCAGTGACATGAGTATGCAAGCAAACGAATCTTTTCTGAGACAAGTGAACAAAGATCCTGAAGGATATGTCCCAATATCCCTTATTGCTTCTACCAAAAAGATCAAGGCCCTCACTGGTAACATTCATTTGCTTACTCAAGCAATCCGTTCATCGTCGAAACTTgtTTTAAGTGCTGATGGAAAGAAGGTGAAACGCAAGCACCCTTTCACTGAGAAGGACAAAGAGGAATTGCAGTCTCGTACTGTTGTGGCAGAGAATTTACCAGAAGATCACTCCCATCAAAATCTACAAAAAATATTCAGTGTAGTTGGAAGTGCGAAAACTATTAGAATATGCCATCCCCAGGAATCTAATTCCTCCCGCCCAAAAGGTGATTTATTCATCAGTAACaagCTCCATGCACTCGTGGAGTATGAGACAACAGATATAGCTGAGAAAGCTGTTGACAAGTTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGGCTGCTGCTTAGATGCTCGCCAAAATCTGTTTTGAAGAGTAGAAAGTCAGAATTTGATGGCATTCTGGACGATGATGAGATTCTTAATTCTGATTCTGCTGAGGATTCTTCTCGTACAAACAGCGCAGATTTGAATGCTGAGACTAATGTTGAAGAAAATACACCAGGATCTAAGAAAGGATGGGCTAGAGGACGTGGTAAGGGTAGAGGACGTGTTCAAAGCCATGGTGGGCGTGGCTTGCTTGCTCCACCATCTCAACTGAGCAGCATTGTCCTGTCCGAAGCATCTGTCAATATCAAGCACAGCTCTAATGGACCAAGAATGCCAGATGGGACCAGAGGTTTCACCATGGGACGAGGCAAGCCAGTTATTTCTCTTGCTCTACCCACTTCAACTCAGGAGTA 1220 0.4418 MAQAQPEEKTHENPGLKDTKEPANASFKFNAQAPEFVPRSQTQIPISGYFYPCFQILGGAGGSDWFYVSDQDPTCLIPGTNVALPNCSKNILTNDLQQKIVKQVEYQFSDMSMQANESFLRQVNKDPEGYVPISLIASTKKIKALTGNIHLLTQAIRSSSKLVLSADGKKVKRKHPFTEKDKEELQSRTVVAENLPEDHSHQNLQKIFSVVGSAKTIRICHPQESNSSRPKGDLFISNKLHALVEYETTDIAEKAVDKLNDERNWRKGMRVRLLLRCSPKSVLKSRKSEFDGILDDDEILNSDSAEDSSRTNSADLNAETNVEENTPGSKKGWARGRGKGRGRVQSHGGRGLLAPPSQLSSIVLSEASVNIKHSSNGPRMPDGTRGFTMGRGKPVISLALPTSTQE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00270 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Bva13g00270 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 273 IPR000504 GO:0003723
Bva13g00270 406 PRINTS Lupus La protein signature 238 256 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva13g00270 406 PRINTS Lupus La protein signature 182 198 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva13g00270 406 PRINTS Lupus La protein signature 103 120 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva13g00270 406 PRINTS Lupus La protein signature 160 173 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva13g00270 406 PRINTS Lupus La protein signature 129 144 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva13g00270 406 ProSiteProfiles La-type HTH domain profile. 90 181 IPR006630 -
Bva13g00270 406 CDD RRM_La_like_plant 188 275 IPR034878 GO:0003723
Bva13g00270 406 PANTHER LA-RELATED PROTEIN 6C 8 397 - -
Bva13g00270 406 SUPERFAMILY RNA-binding domain, RBD 173 274 IPR035979 GO:0003676
Bva13g00270 406 MobiDBLite consensus disorder prediction 301 356 - -
Bva13g00270 406 MobiDBLite consensus disorder prediction 372 392 - -
Bva13g00270 406 Pfam Ataxin-2 C-terminal region 26 41 IPR009818 -
Bva13g00270 406 MobiDBLite consensus disorder prediction 305 327 - -
Bva13g00270 406 Pfam La domain 100 157 IPR006630 -
Bva13g00270 406 Gene3D - 174 274 IPR012677 -
Bva13g00270 406 Gene3D - 87 173 IPR036388 -
Bva13g00270 406 SUPERFAMILY "Winged helix" DNA-binding domain 91 183 IPR036390 -
Bva13g00270 406 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g00270 406 PANTHER LUPUS LA PROTEIN-RELATED 8 397 IPR045180 -
Bva13g00270 406 SMART la 94 174 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00270 Bva-Chr13 1280303 1283372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00270 K15191 - gmx:100796786 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00270 13 1280303 1283372 Bva13g00270 13 1280303 1283372 ECH