Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00246 ATGTTGGTAGAGAAAAGCAGCAGTTTTCAACGATCGCGACCCAACTTGGGAGCTCTTATGCATTCCGACCCGACATCCCTTTACACCGGCAACCTGCGCGAAGGAGACGATTTGTCTCAACACACTCTAGGCAATGCATCCGCTGCCAGCCCACGATACTATGGCGGCGCCGATAGTACAACCTCCAGCAACAGTGCCTCCCCATACTACATGTCTCCAATGAACCCTCCCCTCTCTCCCTATAACAAATCTCCATGGATACTCCCTTCGCCTCTGAACTTCAACCCCTTTCACTTCCAGGAAGAAAGTTTGCCTCCAAATGGCCTCATCGGGTCGGTCGTACGTGAAGAGGGTCACATATATTCTTTGGCGGTTTCTGGGGAATTCTTATATACCGGCTCCGATAGCAAAAACATTCGGGTCTGGAAGAATCTCAAAGATTACGCGGGTTTCAAATCTGGAAGTGGGTTGGTTAAAGCCATAGTTATTTCCGGGGACATAATATTTACCGGTCACCAAGATGGGAAAATCAGGGTGTGGAAGATTTGCCCCAAAAGTCCCGGCAGTCACAAACGAATCGGAAGCTTGCCCACTGTCAAGGATTACGTTAAAAGCTCAATGAACCCAAAGAACTACGTCCAAGTCCGACGACACAAGAATGCTGTCAAAATCAAGCATTTCGACGCCATTTCGAGCTTGAGCTTGGACCAAGACCAAGGCTTGTTATATTCGGGTTCCTGGGACAAAACATTGAAGGTTTGGCGCATATCAGATTCCACGTGCTTGGAATCCATCGATGCCCATGACGACGCCGTTAACTCCGTGGTGGCTGCGTTCGGATGTTTCGTGTTTACGGGTTCTGCCGATGGGACGGTGAAGATGTGGAAAAGAGTGTCGGAATCGGGGAAAGGGAAAACCAAGCACGTGTTGGAAGGGGTTCTGTTGAAGCAGGAAAACGCGGTAACGGCTTTGGCAGTGAACACTTCCAACACCTTTTTCTATTGCGGGTCATCGGACGGGTTGGTGAACTTCTGGGAACGTGACCCGAAGAATAGCGAGCTCACCCACGGTGGGGTCCTGAGAGGGCATAAACTCGCGGTGCTTTGCTTGGCCGCTGCGGAGAACCTCGTCTTTAGTGGCTCCGCAGATAGGAATGTTTGCGTGTTTAAGCGGGGGGAGAGTGGGTCCCACACGTGGCTTTCGGTTCTTACGGGGCACACAGGGCCCGTTAAGTGCATTGCCGTTGAACAAGAAGAGGGATCAGCAGCCGCCGCAGCCCAAGATCAACAGAATCATCGTCGTGCCAAGGGAAATCGACGGTGGATAGTGTACACCGGCAGCCTAGACAAGTCCGTGAAGGTGTGGCGCGTGTCGGAACACGCACCGGATTTAAGCATGATCGAATGGATGGCGAGTAACGGACACGCGCCATGTGATTCGCCATTTGGAGCAGCGAGTTGTTCTCCTTCGTCCAACAATATTAAGACAAAACAGGAATTAAGCAACAATTCTAAACATAGATATTA 1526 0.5085 MLVEKSSSFQRSRPNLGALMHSDPTSLYTGNLREGDDLSQHTLGNASAASPRYYGGADSTTSSNSASPYYMSPMNPPLSPYNKSPWILPSPLNFNPFHFQEESLPPNGLIGSVVREEGHIYSLAVSGEFLYTGSDSKNIRVWKNLKDYAGFKSGSGLVKAIVISGDIIFTGHQDGKIRVWKICPKSPGSHKRIGSLPTVKDYVKSSMNPKNYVQVRRHKNAVKIKHFDAISSLSLDQDQGLLYSGSWDKTLKVWRISDSTCLESIDAHDDAVNSVVAAFGCFVFTGSADGTVKMWKRVSESGKGKTKHVLEGVLLKQENAVTALAVNTSNTFFYCGSSDGLVNFWERDPKNSELTHGGVLRGHKLAVLCLAAAENLVFSGSADRNVCVFKRGESGSHTWLSVLTGHTGPVKCIAVEQEEGSAAAAAQDQQNHRRAKGNRRWIVYTGSLDKSVKVWRVSEHAPDLSMIEWMASNGHAPCDSPFGAASCSPSSNNIKTKQELSNNSKHRY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00246 508 Gene3D - 207 306 IPR015943 GO:0005515
Bva13g00246 508 Gene3D - 307 498 IPR015943 GO:0005515
Bva13g00246 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 296 IPR001680 GO:0005515
Bva13g00246 508 MobiDBLite consensus disorder prediction 1 15 - -
Bva13g00246 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 257 - -
Bva13g00246 508 SMART WD40_4 144 181 IPR001680 GO:0005515
Bva13g00246 508 SMART WD40_4 217 255 IPR001680 GO:0005515
Bva13g00246 508 SMART WD40_4 106 143 IPR001680 GO:0005515
Bva13g00246 508 SMART WD40_4 258 296 IPR001680 GO:0005515
Bva13g00246 508 SMART WD40_4 396 456 IPR001680 GO:0005515
Bva13g00246 508 SMART WD40_4 353 390 IPR001680 GO:0005515
Bva13g00246 508 SMART WD40_4 307 346 IPR001680 GO:0005515
Bva13g00246 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Bva13g00246 508 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Bva13g00246 508 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Bva13g00246 508 PRINTS G protein beta WD-40 repeat signature 443 457 IPR020472 -
Bva13g00246 508 Pfam WD domain, G-beta repeat 319 345 IPR001680 GO:0005515
Bva13g00246 508 Pfam WD domain, G-beta repeat 260 296 IPR001680 GO:0005515
Bva13g00246 508 Pfam WD domain, G-beta repeat 117 143 IPR001680 GO:0005515
Bva13g00246 508 Pfam WD domain, G-beta repeat 400 455 IPR001680 GO:0005515
Bva13g00246 508 Pfam WD domain, G-beta repeat 226 254 IPR001680 GO:0005515
Bva13g00246 508 MobiDBLite consensus disorder prediction 22 47 - -
Bva13g00246 508 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 4 469 - -
Bva13g00246 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Bva13g00246 508 CDD WD40 117 456 - -
Bva13g00246 508 SUPERFAMILY WD40 repeat-like 116 466 IPR036322 GO:0005515
Bva13g00246 508 MobiDBLite consensus disorder prediction 1 59 - -
Bva13g00246 508 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 469 IPR045182 -
Bva13g00246 508 Gene3D - 105 193 IPR015943 GO:0005515
Bva13g00246 508 MobiDBLite consensus disorder prediction 487 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00246 Bva-Chr13 1172835 1175210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00246 158 392 Acyl Lipid Metabolism Gene Families AT3G18860 27.586 1.66e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00246 - - gsj:114379287 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00246 13 1172835 1175210 Bva13g00246 13 1172835 1175210 ECH