Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00238 ATGGCGGTTCAACTCCTAAAGCGCTTCCCCATCGCCGCCCACCCTCGCAAATTCTcccctattttcttttcctcttattCATCACCGCCAGATGAGGCTTCTGCCACTCAAAGCTTAGTAGCGAACGTTGTTTCGATCCTCACCCACAACCGTTCCAAGTCTCGTTGGAACCAACTCCATTCTCTCTACCCCAATGGCTTCGATCCCATTGAGTTTTCGGAAATTACAGTCCAGCTTAAGAATAACCCCCATCTCGCACTCCGGTTTTTCCTCTGGACCCAGAACAAATCCCTTTGCAACCACAACCTTCTCTCTTACTCTACAATTACGCACATTCTTGCTAGGGGCCGTCTCAAAACCCATGCCCAGAACGTCATTAAAACTGCTATTCGTGCTTCCGAATTAAAGGAGCCCGGTGAAGATTATTTAAAGTCCACGCCTTTGAAGGTCTTCGAGACTCTTGTAAAGACCTACAGACACTGTGGTTCAGCTCCGTTCGTGTTTGATTTGTTAATCAAATCTTGTCTGGAATCGAGAAAGATTGACCCTTCAATTGAAATCGTCAGAATGCTGCTATCTCGCGGGATTAGCCCGAAAGTTAGTACCttgaattctttaatttatagagTTTGCCGAAGTCGAGGAGCCGAGGCAGCATATGCAATTTACAGAGAGTTTTTTCTGTTAGATGAGGGAAGTCAGCAAAATCTGAAAAGAGGTTTTAGAGTTAGCCCGAATGTTCATACTTATAACGTGTTCATGGTGTGCTATTATCAAGAGGGTTTTGTCGAGAAGGTGAAGGAGATTTGGCATGAAATGGTTGAACATAACTGTGCTCCAAGTGCTTATAGCTATTCTGTTTTGATGTCTGCATTTTGTGAAGAAGGGAACATGGAGGATGTTGAGAAGTTGTGGGTAGAAATGCGAAATAAGGAAATGAAGCCTGATGTAATGaactataatattataattggtGGACTTTGCAAGATCGGAGATATTGTAAGAGCTGAAGAATTTTTCAGAGAAATGACATTGAGTGGTGTAGAGAGTGCTGCTACGACTCACGAGCATCTTATCAAGGGATATTGTAATATTGGAGATGTTAAGTCGGCTCTTCTTGTTTATAAAGATATGTATAGGAAGGGTTTTAGGCCAGAGGATTCAACCCTTGACCTGATGATTAAGTTAATGTGTGATAAAGATAAGGTTCATGAAGCTTTGGAGATTCTGAGAAATGCAATGGACAAGTTTGATTTATTTCCCAAGGAAAAGGGTTATGAAGCCTTGGTTAAGGGGTTATGCAATGAGGGAAGGATGGAAGAAGCATTGAAGCTTCAGGCAGAAATGGTAGGAAAAGGATTTCAACCAAATTCAGAAATATATGGCGCTTTCATAGATGCGTATGTCAGACAAGGGAATGAGGAAGTAGCAGAAGCATTGAGGAAAGAAATGCTCCAAATTCAGTCTCAGAGTTTAAGTTA 1481 0.4085 MAVQLLKRFPIAAHPRKFSPIFFSSYSSPPDEASATQSLVANVVSILTHNRSKSRWNQLHSLYPNGFDPIEFSEITVQLKNNPHLALRFFLWTQNKSLCNHNLLSYSTITHILARGRLKTHAQNVIKTAIRASELKEPGEDYLKSTPLKVFETLVKTYRHCGSAPFVFDLLIKSCLESRKIDPSIEIVRMLLSRGISPKVSTLNSLIYRVCRSRGAEAAYAIYREFFLLDEGSQQNLKRGFRVSPNVHTYNVFMVCYYQEGFVEKVKEIWHEMVEHNCAPSAYSYSVLMSAFCEEGNMEDVEKLWVEMRNKEMKPDVMNYNIIIGGLCKIGDIVRAEEFFREMTLSGVESAATTHEHLIKGYCNIGDVKSALLVYKDMYRKGFRPEDSTLDLMIKLMCDKDKVHEALEILRNAMDKFDLFPKEKGYEALVKGLCNEGRMEEALKLQAEMVGKGFQPNSEIYGAFIDAYVRQGNEEVAEALRKEMLQIQSQSLS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00238 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Bva13g00238 493 Gene3D Tetratricopeptide repeat domain 381 490 IPR011990 GO:0005515
Bva13g00238 493 Gene3D Tetratricopeptide repeat domain 311 380 IPR011990 GO:0005515
Bva13g00238 493 Gene3D Tetratricopeptide repeat domain 74 226 IPR011990 GO:0005515
Bva13g00238 493 Gene3D Tetratricopeptide repeat domain 227 310 IPR011990 GO:0005515
Bva13g00238 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Bva13g00238 493 Pfam PPR repeat 312 344 IPR002885 -
Bva13g00238 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Bva13g00238 493 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 9 489 - -
Bva13g00238 493 Pfam PPR repeat family 245 293 IPR002885 -
Bva13g00238 493 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 489 - -
Bva13g00238 493 Pfam Pentacotripeptide-repeat region of PRORP 349 475 IPR033443 -
Bva13g00238 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Bva13g00238 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Bva13g00238 493 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Bva13g00238 493 TIGRFAM PPR: pentatricopeptide repeat domain 354 385 IPR002885 -
Bva13g00238 493 TIGRFAM PPR: pentatricopeptide repeat domain 426 457 IPR002885 -
Bva13g00238 493 TIGRFAM PPR: pentatricopeptide repeat domain 320 349 IPR002885 -
Bva13g00238 493 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Bva13g00238 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00238 Bva-Chr13 1143528 1148446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g00238 23 485 Glycosyltransferase AT1G05670 25.143 9.32e-46 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00238 - - gmx:100809831 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00238 13 1143528 1148446 Bva13g00238 13 1143528 1148446 ECH