Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00213 ATGGTAGCTCCAGCTATCTGTGTGTCCGCAAGCTTCTCCGTGGCTTCTCGCAACAGAAACTCCTCCGACCTCTTATCTCACAGAAACCCATGTGCCGTAGCTTCTTCCTTGCCAAGCCCCTATGGCGATTCGTTGAAAATTGGGTTATCTAGTAAAGGTCGCAGCTTTCCTTTAAAATTCGATGAAAGAAATCTTCATAATGCGAGTACAAGTTATGGCACAATAGAAGCCAAAAGGGGGAACCCACCGGTAATGCCATCAGTGATGACTCCAGGAGGACCTCTGGATCTTTCATATGTATTATTTAGAAATCGTATAATATTCATAGGTCAACCTGTCAATGCAGAAGTGGCTCAGCGAGTTATATCACAGCTTGTGACTCTGGCTACTGTTGATGAAGATGCAGATATATTGGTTTATTTGAACTGCCCTGGTGGAAGCACGTATTCAGTGTTGGCAATTTATGACTGCATGTCTTGGATTAAGCCAAAGGTTGGCACAGTATGTTTCGGGGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCCGGTGGAGAGAAGGGAATGCGCTACGCAATGCCTAATGCACGCATAATGATACATCAACCTCAGAGTGCATGTGGGGGTCACGTGGAAGATGTAAGACGCCAAGTGAACGAAGCTGTTCAATCACGTCATAAAATCGATAGGATGTATTCTGCTTTTACCGGTCAGCCATTGGAGAAGGTGCAACAATACACCGAGAGGGACCGTTTTCTATCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTTGAAACAGAGTATTG 815 0.454 MVAPAICVSASFSVASRNRNSSDLLSHRNPCAVASSLPSPYGDSLKIGLSSKGRSFPLKFDERNLHNASTSYGTIEAKRGNPPVMPSVMTPGGPLDLSYVLFRNRIIFIGQPVNAEVAQRVISQLVTLATVDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSACGGHVEDVRRQVNEAVQSRHKIDRMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00213 271 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 11 271 IPR023562 -
Bva13g00213 271 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 11 271 - -
Bva13g00213 271 PRINTS Clp protease catalytic subunit P signature 136 156 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 PRINTS Clp protease catalytic subunit P signature 96 111 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 PRINTS Clp protease catalytic subunit P signature 167 184 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 PRINTS Clp protease catalytic subunit P signature 245 264 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 PRINTS Clp protease catalytic subunit P signature 188 207 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 84 270 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 Pfam Clp protease 98 269 IPR023562 -
Bva13g00213 271 CDD S14_ClpP_2 96 266 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva13g00213 271 SUPERFAMILY ClpP/crotonase 95 269 IPR029045 -
Bva13g00213 271 ProSitePatterns Endopeptidase Clp histidine active site. 189 202 IPR033135 -
Bva13g00213 271 Gene3D - 76 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00213 Bva-Chr13 1027164 1030565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00213 K01358 - gmx:100799710 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00213 13 1027164 1030565 Bva13g00213 13 1027164 1030565 ECH