Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g00197 ATGGCGGAAGAAGCAGTTCTCAGTTACCTCGAAAAGAATCAGGAAATTTCAGATTCAGGTCAGTTCGCAGCTCAACGTGGAATCGACCATAATGAGATCGTCAATGTCATCAAGAGCCTCCATGGTTTCAGATATGTTGATGCTGAGGACATAAAAAGAGAGACATGGGTGCTTACTGACGAGGGGAAGACATATGCTGCTGCGGGGTCACCTGAAGTGCAACTATTCTTAGCCATACCACCTGAGGGTATCTCTAGGGAAGAACTCCAGAAAAAGCTGGAACCCCCAGCATTCAAAATAGGTTGTGCCCAGGCTGCAAAGAACAAATGGGTGGAAATGGGAAAACTTATATCCAGAAAGGTGCAACACGTGGATGATAGAGTCAAAGATTTGCTTCTTCAGATACAAGAGGGAAAGGCCATTAGCTCAGAAGATATCAAGGCACTCAAAGCACGAAAGCTCATTATTCCACAGACATGGAAGGGCTACTCAGTGAAGAAGGGTCCTAATTATgctccaaaaagaaagaaagttgtCACTGATTTAACTCGGGATAATTTACAGAGtGGTGAGTGGAAGGGGTTGGAGTTCAAAGAGTACAACTACAGTGCTAAAGGTCAGCCTCTAGAGGGTGGCAATCTTCATCCACTGCTGAAGGTTAGATATcaacttaaaaagattttCCTCTCCATGGGGTTCGAGGAGATGCCAACAAACAATTTTGTTGAGAGCAGCTTCTGGAACTTTGACACCTTGTTCCAGCCCCAACAACACCCCGCTCGTGATTCACATGACACATTCTTTTTGAAAGCTCCTTCAACAACAAAGGAATTGCCAGAAGATTATGTTCAGAGGGTGAAGCAAGTTCATGAATCTGGTGGTTACGGGTCAAGAGGATATCATTATGATTGGAAAAGAGAGGAGGCAAATAAAAACCTCTTGCGAACCCACACAACTGCTGTTTCCTCCAGGATGCTTTACTTGCTGGCACAGAAACcattttctccaaaaaaatatttctcaattGATCGAGTATTCAGAAATGAAGCAGTTGATCGGACTCATCTTGCTGAGTTCCACCAAATAGAAGGCCTTGTTTGCGATCGTGGTCTCACTCTTTGTGATTTGATAGGAGTCCTGCATGACTTTTTCTCACGCATGGGCATGACCAAGCTGCGGTTCAAACCTGCTTACAATCCATATACGGAACCTAGCATGGAAATTTTCAGTTATCACGAAGGCTTTAAAAAATGGGTAGAGGTAGGAAACTCTGGTATGTTCAGACCTGAGATGTTGCTTCCTATGGGACTTCCTGAAGATGTCCGCGTTATTGCATGGGGTCTTTCCCTTgaaagACCAACGATGATATTATACGGGATAGATAACATCAGGGATCTCTTCGGACATAAGGTGGATCTTGGccttataaagaaaaattcaatatgTCGCCTGGGAATTGACTA 1463 0.419 MAEEAVLSYLEKNQEISDSGQFAAQRGIDHNEIVNVIKSLHGFRYVDAEDIKRETWVLTDEGKTYAAAGSPEVQLFLAIPPEGISREELQKKLEPPAFKIGCAQAAKNKWVEMGKLISRKVQHVDDRVKDLLLQIQEGKAISSEDIKALKARKLIIPQTWKGYSVKKGPNYAPKRKKVVTDLTRDNLQSGEWKGLEFKEYNYSAKGQPLEGGNLHPLLKVRYQLKKIFLSMGFEEMPTNNFVESSFWNFDTLFQPQQHPARDSHDTFFLKAPSTTKELPEDYVQRVKQVHESGGYGSRGYHYDWKREEANKNLLRTHTTAVSSRMLYLLAQKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRMGMTKLRFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLLPMGLPEDVRVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKNSICRLGID 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g00197 487 Gene3D - 71 124 - -
Bva13g00197 487 TIGRFAM pheS: phenylalanine--tRNA ligase, alpha subunit 163 477 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Bva13g00197 487 Pfam PheRS DNA binding domain 3 70 124 IPR040725 -
Bva13g00197 487 Pfam tRNA synthetases class II core domain (F) 200 473 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Bva13g00197 487 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 224 478 IPR006195 -
Bva13g00197 487 CDD PheRS_alpha_core 215 472 - -
Bva13g00197 487 Gene3D - 7 198 - -
Bva13g00197 487 SUPERFAMILY Class II aaRS and biotin synthetases 200 472 IPR045864 -
Bva13g00197 487 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 3 485 - -
Bva13g00197 487 PANTHER PHENYLALANYL-TRNA SYNTHETASE 3 485 - -
Bva13g00197 487 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Bva13g00197 487 Gene3D - 58 155 - -
Bva13g00197 487 Gene3D Bira Bifunctional Protein; Domain 2 215 486 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g00197 Bva-Chr13 952710 958832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g00197 K01889 - gmx:100792325 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00197 13 952710 958832 Bva13g00197 13 952710 958832 ECH