LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g00184	ATGGCCTCTGTCTCTGTGACCCTGAAAGCCAATATCCATTTAGCAAACTTGTCAACCAGTTTGAGAACCGAGAAGGGGATCAGAAAGGTCAAAATTGGCGTTGCCTCTGCTGTTCTTACATCAAATAATGCCAGAGAAGCTACGATCTTGCAGGTGCCATCTTTTCAGAGACGAAAGGCAGACCCAAAAAATGTAGTTTCCATCATACTGGGAGGAGGCCCTGGGACTCAACTTTTTCCTCTTACCAAACGAGCTGCAACTCCTGCTGTCCCTGTTGGTGGATGCTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAATAGTGGCATTAACAAGATTTTTGTCCTGACTCAGTTCAACTCTGCATCTCTGAACCGTCATATTGCCCGCACTTATTTTGGAAATGGTGTGAGCTTTGGAGATGGAATTGTGGAGGTTCTTGCTGCTACTCAAACACCAGGAGAAGCAGGAAAGAATTGGTTCCAAGGGACTGCGGATGCTGTCAGACAATTTACATGGGTATTTGAGGATGCCAAGAACACCAAAGTTGAGAATGTATTGATCTTGGCAGGGGATCATCTATATCGAATGGATTACATGGACCTCATTCAGAGCCACGTAGATAGAAATGCTGATATTACAATCTCATGTGCTGCAGTGGGTGACAGCCGTGCATCTGATTATGGACTGGTGAAGGTAGATGGCAGTGGCCGCGTCATCCAATTTTCAGAAAAACCAATGGGTGCTGATCTGAAAGAAATGCAAGTAGATACCAGTTTTGTTGGGCTGTCGCCCCAAGATGCACTGAAATTGCCATATATTGCATCCATGGGCGTTTACGTATTTAAGACAGATGTTTTGCTGAAGCTTCTGAAATGGAGATATCCCAAAGCTAATGACTTTGGATCTGAAATCATTCCTGCTGCTCTGAAGGAAAATGATGTTCAAGCGTATTTTTTCAGAGACTACTGGGAAGATATTGGAACCATAAAATCCTTTTATGAGGCCAACCTTGCTCTTGCTGAAGAGAATccaaagtttgaattttatgaCCCCAAGACACCCATTTATACATCTCCTGGATTCCTACCACCTACCAAGATCGATAACTGTCGGATTGTGGATGCAATAATCTCACATGGATGTTTCCTGCGAGAGTGTACTGTCCAACACTCCGTTGTGGGCGAACGCTCACGTTTGGACTATGGTGTTGAGCTGCAGGACACTGTGATGATGGGTGCAGACTATTATCAAACTGAATTAGAAATTGCTTCTCTACTGGCAGAGGGAAAGGTGCCAATCGGGATTGGCAGTAATACCAAAATTAGGAACTGCATCATTGACAAAAATGCCAAGATAGGGAAAGACGTCATCATCATAAACAAAGATGGTGTTCAAGAAGCAGATAAACCGGAAGAGGGATTTTACATTCGATCAGGAATCACCGTCATAATGGAGAAAGCAACAATAGAAGATGGCACTGTCATATA	1493	0.4334	MASVSVTLKANIHLANLSTSLRTEKGIRKVKIGVASAVLTSNNAREATILQVPSFQRRKADPKNVVSIILGGGPGTQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGVSFGDGIVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTKVENVLILAGDHLYRMDYMDLIQSHVDRNADITISCAAVGDSRASDYGLVKVDGSGRVIQFSEKPMGADLKEMQVDTSFVGLSPQDALKLPYIASMGVYVFKTDVLLKLLKWRYPKANDFGSEIIPAALKENDVQAYFFRDYWEDIGTIKSFYEANLALAEENPKFEFYDPKTPIYTSPGFLPPTKIDNCRIVDAIISHGCFLRECTVQHSVVGERSRLDYGVELQDTVMMGADYYQTELEIASLLAEGKVPIGIGSNTKIRNCIIDKNAKIGKDVIIINKDGVQEADKPEEGFYIRSGITVIMEKATIEDGTVI	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g00184	497	Pfam	Nucleotidyl transferase	67	343	IPR005835	GO:0009058\|GO:0016779
	Bva13g00184	497	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	52	362	IPR029044	-
	Bva13g00184	497	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	11	497	IPR011831	GO:0005978\|GO:0008878
	Bva13g00184	497	SUPERFAMILY	Trimeric LpxA-like enzymes	360	497	IPR011004	-
	Bva13g00184	497	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	276	286	IPR005836	GO:0005978\|GO:0008878
	Bva13g00184	497	CDD	ADP_Glucose_PP	68	328	-	-
	Bva13g00184	497	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	64	458	IPR029044	-
	Bva13g00184	497	CDD	LbH_G1P_AT_C	365	491	-	-
	Bva13g00184	497	Gene3D	Hexapeptide repeat proteins	363	497	-	-
	Bva13g00184	497	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	71	90	IPR005836	GO:0005978\|GO:0008878
	Bva13g00184	497	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	161	169	IPR005836	GO:0005978\|GO:0008878
	Bva13g00184	497	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC	11	497	-	-
	Bva13g00184	497	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	65	461	IPR011831	GO:0005978\|GO:0008878

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g00184	Bva-Chr13	887314	891713	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva13g00184	K00975		-	gmx:100796717	864.759

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva13g00184	13	887314	891713	Bva13g00184	13	887314	891713	ECH