Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02778 ATGGCGGCATCGCTCAGCAGCTCTGCTGTTTGCAGAACCCATCACCACTCTTCGAGGCTAGTTCATAAGGAACCTTACCCTTCTTCCCAATTGCCCTCGAAGTTGCTAAAATTTACGGCTTTGCCTTCTGCTTCCGTTGTCAGAACCACCTCCACCAGAACTTCCTCAACTATCTCTTGCGCGCTAACCAGAGACACTGTTCCTATGGAGGTCCAGACCAAGAGTGATAATGGGTCGGCTCTAGTTCAAAGACCCGATTCGTTTGGTCGATTCGGGAAGTTTGGTGGCAAGTACGTCCCTGAAACTCTAATGTATGCACTCTCGGAGCTCGAGGCTGCGTTCCTTTCCCTTGCAGCTGATGAAGATTTTCAGAGAGAATTGAATGGGATTCTCAGAGACTTCGTGGGTAGGGAGAGTCCTCTTTATTTTGCAGAGAGGTTGACTGAGCATTACAAACGACCTAATGGTGAAGGGCCACACCTTTATCTGAAGAGGGAAGATCTTAACCACACTGGGGCTCACAAAATTAACAATGCAGTTGCTCAAGCTTTACTTGCCAAGCGGTTGGGCAAGAAGCGCATTATTGCAGAGACTGGAGCTGGTCAGCATGGAGTTGCCACTGCTACTGTATGCGCTAGATTTGGTTTACAGTGCATAATTTATATGGGAGCCCAAGACATGGAAAGGCAGGCACTCAATGTCTTCAGAATGCGTCTTCTTGGTGCTGAGGTGAGACCAGTCCATTCCGGGACTGCTACACTGAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTGACTAATGTAGAGACAACTCATTATATTTTGGGTTCTGTTGCTGGTCCACACCCATATCCTATGATGGTAAGAGATTTCCATGCAGTGATTGGTAAGGAAACCAGAAAACAAGCTTTGGAAAAATGGGGAGGGAAACCAGATGTTCTGGTTGCATGCGTGGGTGGAGGTTCAAATGCCATAGGACTTTTCCATGAATTCGTTGATGACAAGGATGTTAGGCTGATTGGTGTGGAGGCTGCTGGATTTGGCCTGGACAGCGGCAAGCACGCTGCTACCTTAACAAAGGGGGAAGTAGGGGTTTTGCATGGAGCTATGAGTTATTTATTACAGGACGATGATGGGCAAATAATTGAACCTCACTCTATTAGTGCTGGATTGGACTACCCTGGCGTTGGACCAGAACATAGCTATTTGAAAGATTTAGGACGATCTGAATATTATAGCGTCACCGATGAAGAAGCATTAGAAGCTTTCAAGAGAGTATCACGATTGGAAGGCATAATTCCTGCTTTGGAGACTTCTCATGCTTTGGCTTATCTGGAGAAACTCTGCCCGTCTCTACCAAATGGAGCCAAGGTGGTCGTTAACTTCAGTGGCCGCGGAGATAAGGATGTTCAAACTGCCATTAAGCACTTGAAAGTTTG 1442 0.4681 MAASLSSSAVCRTHHHSSRLVHKEPYPSSQLPSKLLKFTALPSASVVRTTSTRTSSTISCALTRDTVPMEVQTKSDNGSALVQRPDSFGRFGKFGGKYVPETLMYALSELEAAFLSLAADEDFQRELNGILRDFVGRESPLYFAERLTEHYKRPNGEGPHLYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAIGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSYLKDLGRSEYYSVTDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPSLPNGAKVVVNFSGRGDKDVQTAIKHLKV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02778 480 TIGRFAM trpB: tryptophan synthase, beta subunit 89 477 IPR006654 GO:0004834|GO:0006568
Bva12g02778 480 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 85 477 IPR036052 -
Bva12g02778 480 Gene3D - 91 293 IPR036052 -
Bva12g02778 480 CDD Trp-synth_B 106 473 IPR006654 GO:0004834|GO:0006568
Bva12g02778 480 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 1 480 - -
Bva12g02778 480 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 168 182 IPR006653 GO:0004834|GO:0006568
Bva12g02778 480 Gene3D - 136 471 IPR036052 -
Bva12g02778 480 PIRSF Trp_syn_beta 70 480 IPR023026 GO:0000162|GO:0004834
Bva12g02778 480 Hamap Tryptophan synthase beta chain [trpB]. 84 478 IPR023026 GO:0000162|GO:0004834
Bva12g02778 480 Pfam Pyridoxal-phosphate dependent enzyme 136 465 IPR001926 -
Bva12g02778 480 PANTHER TRYPTOPHAN SYNTHASE-RELATED 1 480 - -
Bva12g02778 480 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02778 Bva-Chr12 20143406 20147025 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02778 K01696 - gmx:100792812 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02778 12 20143406 20147025 Bva12g02778 12 20143406 20147025 ECH