Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02725 ATGGAAACCAAGCTTAGACCTGGTTTTACTACTCTCTTCATTTGCTTGTTCTTGTTGCCTACCGTATTTTGTGCCTCCAATGATGGATTGGTCAGAATTGGGCTCAAGAAAAGGAAGTTTGAACACAACAACCGGGTTGCTGCCCGTCTAGATTTAAGGGATGGAGTGTCTTTGATAGGGCATGCTGAGAAATATCGTTTCAATGGGAAATTAGGCGATGGGGAAGATGTTGATATTGTGGCACTGAAGAATTATCTAGATGCTCAATATTTTGGTGAGATTGGCATTGGTACTCCCCCACAGAATTTCACAGTCATATTTGACACGGGCAGTTCTAATTTGTGGGTCCCCTCTTCAAAATGTTATTTCTCAGTCGCTTGCTATTTTCACTCAAAGTACAAGTCTAGCCGTTCAAGCACCTATGAGAAGAATGGTAAAACTGCAGAAATCCACTACGGAACTGGTGCAATTTCAGGGTTCTTTAGTCAAGACAATGTGAAAGTCGGTGACCTGGTGGTGGAGGGTCAGGAATTTATTGAGGCAACGAGGGAGCCTAGTCTCACATTTCTGGTCGCCAAGTTTGATGGCATCCTTGGACTTGGATTTCAAGAGATTTCTGTTGGACATGCTGTGCCTGTCTGGTACAACATGGTCAACCAGGGTCTGGTTAAGGAACCAGTTTTCTCATTTTGGCTTAACCGCAATGCCGATGAAGAAGAAGGTGGTGAATTAATCTTTGGTGGGGTGGACCCTAAACATTACAAGGGCAGGCATACATATGTTCCTTTGACTCAGAAAGGCTATTGGCAGTTTGAGATGGGCGATGTGAAAATTGGTGGTGAATCAACTGGATTTTGTGCTGGTGGCTGTTCAGCAATCGCTGATTCTGGAACCTCTTTATTGGCTGGCCCCACGACTATTATTGCTGAAGTCAATCATGCAATTGGGGCTACAGGGGTATTGAGTCAGGAATGCAAGGTTATGGTTTCGCAGTATGGAGAAACTATTATTCAGATGCTTCTAGCGGAGGATCAACCAGAGAAGATATGCTCACAGATTGGTTTGTGCACTTTCAATGGTGCTCGAGGTGTCAGCATGGGCATCGAGAGTATTGTTGATAAAAGTGCTGGAAAAAGCCATCCTGGTTTGCATGATGCAATGTGTTCAAGTTGCGAGATGGCTGTGGTATGGATGCAAAACCAGCTTAGGCAGAACCGAACCCAGGAGCATATACTTAACTATGTTAATGAGCTTTGTGAACGACTGCCTAGTCCAATGGGTGAATCCTCAGTTGATTGTAACAGTTTGGCTTCAATGCCTAATGTTTCCTTGACGATTGGAGGGAAGATATTTGAACTCACACCTGAGCAGTATGTTCTGAAAGTTGGCGAGGGAGACGTGTCCCAGTGCATCAGTGGATTTATAGCCATGGATATTCCACCTCCTCGCGGGCCTCTCTGGATCCTCGGTGATGTTTTCATGGGTAGCTACCATACAGTATTTGACTTTGGAAATGAGAGAATTGGATTTGCAGAAGCTGCCTA 1544 0.4462 METKLRPGFTTLFICLFLLPTVFCASNDGLVRIGLKKRKFEHNNRVAARLDLRDGVSLIGHAEKYRFNGKLGDGEDVDIVALKNYLDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSVACYFHSKYKSSRSSTYEKNGKTAEIHYGTGAISGFFSQDNVKVGDLVVEGQEFIEATREPSLTFLVAKFDGILGLGFQEISVGHAVPVWYNMVNQGLVKEPVFSFWLNRNADEEEGGELIFGGVDPKHYKGRHTYVPLTQKGYWQFEMGDVKIGGESTGFCAGGCSAIADSGTSLLAGPTTIIAEVNHAIGATGVLSQECKVMVSQYGETIIQMLLAEDQPEKICSQIGLCTFNGARGVSMGIESIVDKSAGKSHPGLHDAMCSSCEMAVVWMQNQLRQNRTQEHILNYVNELCERLPSPMGESSVDCNSLASMPNVSLTIGGKIFELTPEQYVLKVGEGDVSQCISGFIAMDIPPPRGPLWILGDVFMGSYHTVFDFGNERIGFAEAA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02725 514 Pfam Saposin-like type B, region 2 323 356 IPR008138 -
Bva12g02725 514 Gene3D Acid Proteases 249 514 IPR021109 -
Bva12g02725 514 Gene3D - 320 423 - -
Bva12g02725 514 SUPERFAMILY Saposin 321 423 IPR011001 -
Bva12g02725 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 292 303 IPR001969 GO:0004190|GO:0006508
Bva12g02725 514 SUPERFAMILY Acid proteases 11 513 IPR021109 -
Bva12g02725 514 ProSiteProfiles Saposin B type domain profile. 320 360 IPR008139 -
Bva12g02725 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Bva12g02725 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629
Bva12g02725 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190|GO:0006508
Bva12g02725 514 ProSiteProfiles Peptidase family A1 domain profile. 90 511 IPR033121 -
Bva12g02725 514 Pfam Eukaryotic aspartyl protease 89 513 IPR033121 -
Bva12g02725 514 Gene3D Acid Proteases 31 248 IPR021109 -
Bva12g02725 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 8 514 IPR001461 GO:0004190|GO:0006508
Bva12g02725 514 CDD phytepsin 80 512 IPR033869 GO:0004190
Bva12g02725 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Bva12g02725 514 PRINTS Pepsin (A1) aspartic protease family signature 292 303 IPR001461 GO:0004190|GO:0006508
Bva12g02725 514 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Bva12g02725 514 PRINTS Pepsin (A1) aspartic protease family signature 242 255 IPR001461 GO:0004190|GO:0006508
Bva12g02725 514 SMART sapb_4 284 356 IPR008139 -
Bva12g02725 514 PANTHER ASPARTIC PROTEINASE-LIKE 8 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02725 Bva-Chr12 19890745 19895382 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02725 K08245 - jre:108984384 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02725 12 19890745 19895382 Bva12g02725 12 19890745 19895382 ECH