Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02709 ATGGCTTCCCGCCcgttctctttcttgttcttcgTTCTTTTTCTATCACTCTCTGCTTCTTCAGAAGCGGCGGGTTCTGTGGGAATAAACTACGGCAGGGTGGCCAACGACCTTCCAACGCCTTCGAAGGTGGTGGACCTTCTAAAAGCTCAAGGGATCAACCGGCTCAAGCTTTTCGACACTGACGCAACTGTGCTCACGGCCCTTGCCAACTCTGATATAAGCGTCGTCGTAGCTATGCCCAATGAGCTTCTGCCCTCCGCCGCCGCTGACCAATCGTTCACCGACGCGTGGGTCCAAGCAAACATCTCCCATTTCTATCCCGCCACCAAAATCGAAGCCATTGCCGTAGGCAATGAAGCCTTCGTCGACCCGAAGGGCACGACCAAGTTCCTCGTTCCAGCGATGAAGAACGTTCATGCGTCGCTCCTGAAGTACAACCTCGattctaacattaaaatctcGTCGCCGATAGCTCTCTCTGCTTTACAATCTTCGTACCCAACTTCATCTGGAGCATTCAAGTCTGAATTGATCGAACCCGTGATCAAACCCATGTTGGATTTTCTGCGCCAGACGTCGTCGTATCTTATGGTGAACGCATATCCTTTTCTCGCATACGCCGCAAATGCTGATAAGATCGCGTTGGACTATGCACTCTCGAACCAGAACCCGGGCGTAGTGGATTCGGGCAACGGGTTGAAATACTACAGCTTGTTTGAGGCTCAAATCGACGCCGTTTTTGCGGCCTTATCGGTTCTCAAATACGACGACGTCAAGGTGGTGGTCACAGAGACGGGGTGGCCCTCAAAAGGGGACGAGAATGAAACTGGCGCAAACGAACAGAATGCGGCGTCGTATAATGGTAACCTCGTCAAGCGGGTGCTAACGGGTAATGGGACCTCCTTGAGACCGAAGGACCCACTCAACGTTTTTCTTTTCGCTTTGTTCAACGAGAACCAAAAACCGGGGCCCACATCGGAGAGAAACTTCGGACTCTTCTATCCCAATGAGCAAAAGGTTTATGACATCCCGTTGACTCTATCGAAGCTTAGTAAGTCAACGCCAGAGAACGTCAGCAAGAGTCAAGTTCCGGCCACCAAAGGCGGGGTCACGACGACGTCTACTCGTGGTCAGACATGGTGCGTGGCTAATGGCAAAGCTGGAGAGGATAAACTGCAGGCAGGTATAGATTATGCATGTGGTCAGGGAGGGGCTGATTGCCGTCCGATTCAACCAGGTGCCGCGTGTTATGATCCCAACACGTTGGAGGCTCATGCTTCTTACGCTTTCAATAGTTATTACCAGAAAATGTCACGCGGTGCTGGCACGTGCGATTTCGGTGGTGTAGCCTATGTTGTCACACAGGCTCCTAGGTATGGGAACTGCGAATTCCCCACAGGGTACTA 1409 0.5075 MASRPFSFLFFVLFLSLSASSEAAGSVGINYGRVANDLPTPSKVVDLLKAQGINRLKLFDTDATVLTALANSDISVVVAMPNELLPSAAADQSFTDAWVQANISHFYPATKIEAIAVGNEAFVDPKGTTKFLVPAMKNVHASLLKYNLDSNIKISSPIALSALQSSYPTSSGAFKSELIEPVIKPMLDFLRQTSSYLMVNAYPFLAYAANADKIALDYALSNQNPGVVDSGNGLKYYSLFEAQIDAVFAALSVLKYDDVKVVVTETGWPSKGDENETGANEQNAASYNGNLVKRVLTGNGTSLRPKDPLNVFLFALFNENQKPGPTSERNFGLFYPNEQKVYDIPLTLSKLSKSTPENVSKSQVPATKGGVTTTSTRGQTWCVANGKAGEDKLQAGIDYACGQGGADCRPIQPGAACYDPNTLEAHASYAFNSYYQKMSRGAGTCDFGGVAYVVTQAPRYGNCEFPTGY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02709 469 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 462 IPR044965 GO:0004553|GO:0005975
Bva12g02709 469 SMART X8_cls 380 465 IPR012946 -
Bva12g02709 469 Gene3D Glycosidases 25 353 - -
Bva12g02709 469 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Bva12g02709 469 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 10 462 - -
Bva12g02709 469 Gene3D - 374 465 - -
Bva12g02709 469 Pfam X8 domain 380 451 IPR012946 -
Bva12g02709 469 Pfam Glycosyl hydrolases family 17 27 344 IPR000490 GO:0004553|GO:0005975
Bva12g02709 469 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02709 Bva-Chr12 19814500 19816251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02709 24 458 Glycoside Hydrolase AT5G55180 72.184 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02709 - - gmx:100803406 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02709 12 19814500 19816251 Bva12g02709 12 19814500 19816251 ECH