Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02697 ATGTCTGTTTCTCGGGTTCTGTCTCGAGTTTCCAGGAGTGTTTGCAGAAGCTCCACGCTTCTCTCTGCTTCGCAGAGGCCCCAACAGTCGCCAGCCCTCCTCAATCAGTTTCATTCCCTTGTTCAGCCATCCCCCAATAAGCTAATTCCAGTTCAAGTTAATTTGTTGCATTCACCGATAAATTCATCCACAACCCCACGATTTGGATTTTTCTCATCGGCCTCTCCTGAAACCTCCAAGAAGGAACATGGGAATCAAGCAAGTAATGGTGCTTCTGCTAATCCTGATCCTGCAAAAGCAGGTGAAGAAGTTAAAGTTGATCAGTCTGCAGAACAGACAAGTGAATCAGATACTGAGAGCGGGGATGATCTATCCAGGGATGATTTAGTGAAGCTTGTGACCGAGAAGGAAGAACTTTTACAGTTGAAGCAGAAAGAGATGGAGAAAATGCAGGACAAAGTTCTACGCAGTTATGCTGAGATGCAGAATGTCATGGACAGGACTAGACGCGAAGCTGAgaactcaaaaaaatttgctaTACAGAATTTTGCGAAGAGTTTTTTGGATGTTGCGGACAACTTAGGGAGAGCTTCATCTGTTGTAAAGGACAGCTTTTCAAAAGTTGATGCGTCCAATGACTCTGCTGGAGCTGTAACACTCCTGAAAACACTTCTAGAAGGTGTTGAAATGACCGAGAAACAACTTGGAGAGGTGTTCAAAAAGTATGGTGTGGAAAAATTTGATCCTAGAAATGAGACGTTTGATCCACACAGGCATAACGCTGTTTTCCAAATTCCTGATGGTTCCAAGCCTCCAGGCACTGTTGCGGTTGTTCTGAAGGCAGGGTATATGCTTTATGATCGTGTTATTCGTCCAGCCGAAGTTGGCGTAACCCAACAAGTGGAGGATAATAATGCCACCGAGACTGATAAGGATTCTCAAggata 947 0.4361 MSVSRVLSRVSRSVCRSSTLLSASQRPQQSPALLNQFHSLVQPSPNKLIPVQVNLLHSPINSSTTPRFGFFSSASPETSKKEHGNQASNGASANPDPAKAGEEVKVDQSAEQTSESDTESGDDLSRDDLVKLVTEKEELLQLKQKEMEKMQDKVLRSYAEMQNVMDRTRREAENSKKFAIQNFAKSFLDVADNLGRASSVVKDSFSKVDASNDSAGAVTLLKTLLEGVEMTEKQLGEVFKKYGVEKFDPRNETFDPHRHNAVFQIPDGSKPPGTVAVVLKAGYMLYDRVIRPAEVGVTQQVEDNNATETDKDSQG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02697 315 Pfam GrpE 134 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 Hamap Protein GrpE [grpE]. 79 299 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 PANTHER GRPE PROTEIN 1 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 PRINTS GrpE protein signature 155 171 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 PRINTS GrpE protein signature 251 266 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 PRINTS GrpE protein signature 278 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 134 243 IPR013805 -
Bva12g02697 315 Coils Coil 129 153 - -
Bva12g02697 315 Gene3D - 128 242 IPR013805 -
Bva12g02697 315 PANTHER GRPE PROTEIN HOMOLOG 1 301 - -
Bva12g02697 315 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 244 299 IPR009012 GO:0006457
Bva12g02697 315 MobiDBLite consensus disorder prediction 296 315 - -
Bva12g02697 315 Gene3D Head domain of nucleotide exchange factor GrpE 243 298 IPR009012 GO:0006457
Bva12g02697 315 MobiDBLite consensus disorder prediction 65 127 - -
Bva12g02697 315 ProSitePatterns grpE protein signature. 254 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bva12g02697 315 MobiDBLite consensus disorder prediction 65 93 - -
Bva12g02697 315 CDD GrpE 148 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02697 Bva-Chr12 19752884 19755672 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02697 K03687 - gmx:100803396 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02697 12 19752884 19755672 Bva12g02697 12 19752884 19755672 ECH