Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02690 ATGGGTAGCGAAAACGAGCCCGCAAAGATCCTTTTACCGTACCTTCAACGAGCCGATGAGTTGCAAAAGCACGAGCCTCTCGTCGCATATTACTGTCGATTGTATGCAATGGAACGGGGATTGAAGATTCCTCAAAGTGAGCGCACCAAGACCACTAGTGCCTTGCTTGTTTCTTTGATGAACCAGCTTGAAAAGGATAAAAAGTCAATCCAGTTGGGGCCTGAAGATAATCTGTATATTGAGGGATTTGCATTAAATGTGTTTGGGAAGGCGGACAAACAAGACCGCGCTGGAAGAGCAGATTTGAATACAGCAAAAACATTTTATGCTGCGAGCatcttttttgaaattcttaaCCAGTTTGGGCCATTGCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGCCTGGAAAGCAGCAGATATAAGAAAGGCTTTGAAAGAAGGAAGGACACCCACAGCTGGTCCACCTGCTGGTGACGAGGACCTGTCTATTCCATCAAGTGCTCCTAGCAATAGATATGACCTTGGGACTACTGAAACTACGGCTACCGGTCCTGCATCAAAATCTGACCCATCACATAATTATCATGATTCCGTTACCTACCAGCATTCCCCGGGCATTCCTCCAGCATCCACATTCCATGATACTGTTAATGACCAGCATTCACCAAGCATTCCTCCAGCACCTAAATTCCAAGATTCTGTTAATGACCAATATTCTACAAACCTTCCACCCTCTATGCAGTTCCATGATAGACTAAACAACCACCATTCTTCGAACATTTCTCCATCATCTCCTCCTTACTCTTCTGCAGAATACCCTTCCCAAGATTACAATCCTCCTCCACCTACCAGATCAGAAAGCTCTTATTCTCAGCCTTATAACCATCAGCAGTATTCACAAGAGCATCCACAACATTTAACTCCTAGTTACCCTTCTCATGATTCTTACTCCTTACCCCAATTTCAGTCATATCCAAGTTTTACTGAAAGCAGCCTCCCATCAGTACCGCCGAACTATACTTACTATCAAGGGGCCGATGCTTCGTATTCTACTCAGTCAGCTCCTCTTACTAGAAACTATTCATCAAGTGCTGAGTATAATTCCAGCAGCAGAAATGGAACTGTCTCAGAACCTAACCCAATTTCCGAGTCCTTCCAGTATGACAGCAACTACCAGCCACCTCCTGAGAAAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCTCTGGCATTTGATGACATGTCAGTTGCAGTAGACTATTTGAGGAAATCACTTGAGTTGCTGACAAGGCCATCAGCTGGTCAGTA 1322 0.4448 MGSENEPAKILLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTSALLVSLMNQLEKDKKSIQLGPEDNLYIEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQFGPLQPDLEQKQKYAAWKAADIRKALKEGRTPTAGPPAGDEDLSIPSSAPSNRYDLGTTETTATGPASKSDPSHNYHDSVTYQHSPGIPPASTFHDTVNDQHSPSIPPAPKFQDSVNDQYSTNLPPSMQFHDRLNNHHSSNISPSSPPYSSAEYPSQDYNPPPPTRSESSYSQPYNHQQYSQEHPQHLTPSYPSHDSYSLPQFQSYPSFTESSLPSVPPNYTYYQGADASYSTQSAPLTRNYSSSAEYNSSSRNGTVSEPNPISESFQYDSNYQPPPEKIAEAHKAARFAVGALAFDDMSVAVDYLRKSLELLTRPSAGQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02690 440 Pfam Vta1 C-terminal domain 397 434 IPR041212 -
Bva12g02690 440 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 438 IPR044538 GO:0032511
Bva12g02690 440 Gene3D - 5 152 IPR023175 -
Bva12g02690 440 Pfam Vta1 like 13 148 IPR039431 -
Bva12g02690 440 MobiDBLite consensus disorder prediction 148 334 - -
Bva12g02690 440 MobiDBLite consensus disorder prediction 283 334 - -
Bva12g02690 440 Gene3D Immunoglobulin FC, subunit C 397 435 - -
Bva12g02690 440 MobiDBLite consensus disorder prediction 362 399 - -
Bva12g02690 440 MobiDBLite consensus disorder prediction 165 276 - -
Bva12g02690 440 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02690 Bva-Chr12 19714278 19717778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02690 1 118 Glycosyltransferase AT2G31960 25.984 1.66e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02690 K12199 - rcu:8268127 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02690 12 19714278 19717778 Bva12g02690 12 19714278 19717778 ECH