Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02679 atgGTTACAGACCAAGAAATATCTCAAGCCGTACAGTCCCTCTTCCGGGAATCAAACCCTAGAAGAACCTTCAACACCTTAAACGACATCGTTCGGGAGCTTCAGGCCAAGCTCGGCGTCGACCTTACCCACAAGGTCGACCTCATCACTGCCCAGATCAACATCCTCTTCGGATCTCACCCACCACGACCGCCGCCGCCGCCACTGCAGCATCACCCAAGGCCGCAGCTTCAACCTCATCCTAATCCTCACTCTCAGTCTCAGTCTCAGTCTCAACCTCAACCACCTCCCAGGGACCATTTTACCCTTCATCAAAACCCTAACTTTCATGCTACTCCTACCCCTGTTTCTTCCGCATTTCACAACTTCCCCTCCCATCAGGCAACGGTTAAAGTCGATGCTGCCACAGCTGCTGACGGCACTGGTTCCGATGCTACTGCCATTCCGGCCGCTGAAGTTCCCAAGGAGAGTACTCAGACTAAGGCAAAGAGAAGAGGTGGCCCAGGAGGTCTCAACAAACTTTGTGGTGTTTCACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTGCCAAGGACTGAGATTGTTAAGCAATTGTGGGCTTACATAAGGAAAAACAACCTCCAAGACCCTagcaacaaaaggaaaataatttgcaATGATGAGTTGCGTGTAGTATTTGAGACTGATTGTACTGATATGTTCAAGATGAATAAGTTGCTAGCTAAGCACATAATCCCCCTTGAACCAACAAAAGAGCCGGTTCCAAAGAAGCAGAAGGTAGATACAGAGTCTGGAACAAAAAGTACTGAACCTGCTGCTACTGCTACTCCTACTCCTGCTCCTGCTCCTGCCCCTGCTCCTTCCGTAGTAATATCAGAAGCACTTGCTAATTTTTTCGGCATTAGTGGGAGGGAGATGCTTCAGTCAGAGGTTTTAGGACGCATCTGGGAATATATAAAGGTCAACCGTCTAGAGGATCCTGTAAATCCTATGGCAATAATGTGTGATGCAAAGCTCCAAGAGCTCTTCGGCTGTGAAAGCATTTCGGCACTGGGTATACCAGAAGTGTTGGGTCGTCATCATATATTCAGGAGATCTTG 1103 0.4787 MVTDQEISQAVQSLFRESNPRRTFNTLNDIVRELQAKLGVDLTHKVDLITAQINILFGSHPPRPPPPPLQHHPRPQLQPHPNPHSQSQSQSQPQPPPRDHFTLHQNPNFHATPTPVSSAFHNFPSHQATVKVDAATAADGTGSDATAIPAAEVPKESTQTKAKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKEPVPKKQKVDTESGTKSTEPAATATPTPAPAPAPAPSVVISEALANFFGISGREMLQSEVLGRIWEYIKVNRLEDPVNPMAIMCDAKLQELFGCESISALGIPEVLGRHHIFRRS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02679 367 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 363 - -
Bva12g02679 367 SMART swib_2 287 367 IPR019835 -
Bva12g02679 367 SMART swib_2 171 250 IPR019835 -
Bva12g02679 367 Pfam DEK C terminal domain 2 55 IPR014876 -
Bva12g02679 367 MobiDBLite consensus disorder prediction 59 80 - -
Bva12g02679 367 MobiDBLite consensus disorder prediction 57 121 - -
Bva12g02679 367 ProSiteProfiles SWIB/MDM2 domain profile. 170 247 IPR003121 -
Bva12g02679 367 CDD SWIB_like 292 361 - -
Bva12g02679 367 ProSiteProfiles SWIB/MDM2 domain profile. 285 364 IPR003121 -
Bva12g02679 367 MobiDBLite consensus disorder prediction 251 265 - -
Bva12g02679 367 PANTHER - 1 363 - -
Bva12g02679 367 MobiDBLite consensus disorder prediction 81 121 - -
Bva12g02679 367 CDD SWIB-MDM2_like 175 245 - -
Bva12g02679 367 Gene3D SWIB/MDM2 domain 286 366 IPR036885 -
Bva12g02679 367 Gene3D SWIB/MDM2 domain 166 254 IPR036885 -
Bva12g02679 367 SUPERFAMILY SWIB/MDM2 domain 289 362 IPR036885 -
Bva12g02679 367 Pfam SWIB/MDM2 domain 290 361 IPR003121 -
Bva12g02679 367 Pfam SWIB/MDM2 domain 175 245 IPR003121 -
Bva12g02679 367 SUPERFAMILY SWIB/MDM2 domain 164 250 IPR036885 -
Bva12g02679 367 MobiDBLite consensus disorder prediction 251 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02679 Bva-Chr12 19655864 19659321 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bva12g02679 SWIB 6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02679 K15223 - gmx:100801960 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02679 12 19655864 19659321 Bva12g02679 12 19655864 19659321 ECH