Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02643 ATGTCCTTTGCTTTCTCACACAACCCCCAAATGGACCCTGAAACATGGTTTCTCTTAAAACCCATTTTCTTGCATGGTTTATCTGGTTTTCTCCACTTGGTTTTGTTTATGTCATTTTTGGTGTTCCGAGCCCGCAGCAAAATCACTGTGAGTTCTAGAGATGGGTCCGAAGAGAAATCCCAGAATACTCTGTATAAGAAGGCTCAATCTTATTCTGTggggttttcttctttcaatcaTATCCTATGTCTATTTAATTACTTCTATTGCTATAAAAGTGGTTGGTTAGATGAAAAGCTCGCGACCCTTTTGGATTTAGCTGCTAAAACGGCTGCTTGGGGAGTGGTTTGCGTTTACTTGCACGCTGGGTTTTTCAACTCAAGTGAAAGAAGATTTCCATTCTTGTTCAAAGTTTGGTGCTTTCTCAACCACATTAGTTCCTGTTATTGCTTTGCAGTGAACATTATTCTACATGAAAAGTATGATTCTTTGCCGATTCAGTATTTAATTTCAGATGTAGTGTCAGCTGCCGTAGGTTTATTGTTCTACTACCAGGGATTTTTGGGGAAAAATGAGGTTGAAAATCGCACTTTTGAGGAACCTCTTTTGCATGGCAATACGAATGTTAGTAAAGCTTCGGAATCAAGCAAGAGTGAGGGGGATGAAACTGTTAGCCCTTACTCTACAGCTGGAATTTTCAGCTTGCTTTCCTACTCATGGATTGGTCCTCTTATTGCTGTTGGCAACAAGAAGATATTAGACCTTGAGGATGTTCCATTACTTGCTAGCAGTGATAGTGCACTTGAAGTTTTCCCAAATTTCAGAAATAAAATCGAGGTAGATTGTGGTATAATTAGCAGAGTTAACACACTCAAGCTGGCAAAGTCAGTAATATTGTCAGTTTCGAAAGAGATTCTACTGACAGCTACTTGTGCAATTGTAAGCGCTTTGGCTTCTTACGTCGGTCCATATCTTATTGATACTTTTGTTAAATACCTCAATGGAAGGCGGAAATTTGAGAATGAGGGCTATTTCTTGGTGTctgcatttttctttgctaAGCTTATAGAGAGCATGGCACAGAGGCAGTGGTTCTTTAGTCTGCGGCAAGCTGGAATCAGGATCCAGGCACTGCTGGTGGCAATAATCTATGGTAAAGGCCTGACTCTATCTTCTCAATCGAAACAGGGTCAGACTAGTGgtgaaataatcaattttgtgaCTGTTGATGCTGAAAGAGTTGGTGACTCCATTTGGTATATCCATGATTTGTGGATGATAGTTCTGCAAGTTTCATTGGCCTCGTTTATTTTGTACAGAAATCTTGGGCTTGCTTCAATTGCTGCTTTAGTTTCAACTGTTGCTGTAATGCTGGCAAATGTTCCCTTGGGAAAAttgcaagaaaattttcaagagaaacTGATGAAGTCTAAAGATGAAAGAATGAAGGCTACATCTGAAGTTTTAAGAAACATGAGCATACTCAAACTACAAGGATGGGAAATGAAGTTTCTGTCTAAGATTATTGATCTGAGAAAGATTGAGCAAGGCTGGTTGAGAAGATTTGTATATACTCAAGCCATGACCTCATTTGTTTTCTGGGCTACCCCTGCTTTTGTTTCTATGGTTACTTTTGGTACTTGTATGCTCATGGGGATTCCTCTTGAATCAGGGAAGATCTTATCTGCACTTGCAACCTTCCGAATTCTTCAAGAGCCCATTTATAATCTTCCAGACACAATTTCAATGATATCACAAGCTAAGGTTTCCCTTGAAAGGATTACATCGTTCCTTCAACTTGATGAATTGCAACTGGGTGCCGTAGAGAGACTTCCAAGGGGTAGTTCTGATATGGCAATTGAAGTAGTTGACGGAAACTTCTCTTGGGATTTATCTTCCTCTGATACcacattgaaaaatataaatctcaaAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGTACTGTTGGCTCAGGAAAATCTAGTTTGCTTTCTTGTATATTGGGAGAAGTACCAAAGATATCAGGAGTTTTGAAGGTGTGTTG 2048 0.3799 MSFAFSHNPQMDPETWFLLKPIFLHGLSGFLHLVLFMSFLVFRARSKITVSSRDGSEEKSQNTLYKKAQSYSVGFSSFNHILCLFNYFYCYKSGWLDEKLATLLDLAAKTAAWGVVCVYLHAGFFNSSERRFPFLFKVWCFLNHISSCYCFAVNIILHEKYDSLPIQYLISDVVSAAVGLLFYYQGFLGKNEVENRTFEEPLLHGNTNVSKASESSKSEGDETVSPYSTAGIFSLLSYSWIGPLIAVGNKKILDLEDVPLLASSDSALEVFPNFRNKIEVDCGIISRVNTLKLAKSVILSVSKEILLTATCAIVSALASYVGPYLIDTFVKYLNGRRKFENEGYFLVSAFFFAKLIESMAQRQWFFSLRQAGIRIQALLVAIIYGKGLTLSSQSKQGQTSGEIINFVTVDAERVGDSIWYIHDLWMIVLQVSLASFILYRNLGLASIAALVSTVAVMLANVPLGKLQENFQEKLMKSKDERMKATSEVLRNMSILKLQGWEMKFLSKIIDLRKIEQGWLRRFVYTQAMTSFVFWATPAFVSMVTFGTCMLMGIPLESGKILSALATFRILQEPIYNLPDTISMISQAKVSLERITSFLQLDELQLGAVERLPRGSSDMAIEVVDGNFSWDLSSSDTTLKNINLKVFQGMKVAVCGTVGSGKSSLLSCILGEVPKISGVLKVC 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02643 682 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Bva12g02643 682 Gene3D ABC transporter type 1, transmembrane domain 287 597 IPR036640 GO:0005524|GO:0016021
Bva12g02643 682 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 86 682 - -
Bva12g02643 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 680 IPR027417 -
Bva12g02643 682 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g02643 682 SUPERFAMILY ABC transporter transmembrane region 303 599 IPR036640 GO:0005524|GO:0016021
Bva12g02643 682 Pfam ABC transporter transmembrane region 307 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g02643 682 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 86 682 - -
Bva12g02643 682 Gene3D - 598 682 IPR027417 -
Bva12g02643 682 Pfam ABC transporter 638 678 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02643 Bva-Chr12 19492250 19494298 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02643 - K05666 gmx:100777836 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02643 12 19492250 19494298 Bva12g02643 12 19492250 19494298 ECH