Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02629 ATGGAGGGAAAGAGGCTGAGCTCGGAGTCACGACGCTTAGACTTGCTGCGAAAAATCAAAGAATTTACTCGAGCTATTATTCAAGACATCAGCAACGGAAAATCACCCATGATTCTCATTGATCGTTTTAGAAATTACTGCTACAGTCCCAGCTCAAACTGTTATTGTGGTTCTGATTTGCCATGGGGAAAGGAGGTTCTCACGTTTAGGAAGGAAACTCATGTACATAGAGTGGATGTGATGTTGAGGGTGCTATTGATTATTCAGCAACTGCTGCAAGAAAACAAGCATAGCTCGAAGAGAGacatttattacatgcatCCATCTGTGTTTTTAGAACAGTCCGTTGTAGACCATGCaataaatgatatatgtaTACTTATGCAATGCAGTCGCCATAACCTTAATGTGgTTTCTGTTGGGAATGGGTTAGTTATGGGTTGGATAAGATTCTTTGAAGGCGAAAAGATATTTGATTGCATCAGTTCTCCTAACAATGCCCACTCTGTTCCTGTTCATGTTGAAGAAGTCAAAGATATTATCAGTGTTGCACATTACATATTAGTTGTTGAGAAAGAATCAGTTTTCCAGAGACTAGCAAATGATCAGTTCTGTAAAACAAATCGTTGCATTGTCATCACTGGAAGAGGCTACCCAGATATTCCTACAAGAAGGTTTTTGCGGCTTCTTATAGAGAATTTGCGTCTGCCTGTCTATTGCTTGGTAGATTGTGATCCATATGGCTTTGACATCTTGACCACTTACAGATTTGGTTCCATGCAAATGGCCTATGACACCAGAAATCTTCGTGTACCTGAGATACAATGGCTCGGAGTTTTTCCTTCAGATTTTGAGAGATATTCTGTTCCAAAGCATTGTCTCCTTCCTCTGACAGCTGAAGataagaaaaaaattgaagccaTGTTGCTTAGATGCTACTTACAAAAGGACGTGCCACAGTGGAGATTTGAGCTAAAGCTGATGCTGCAAAAAGGGGTAAAGTTTGAGATTGAAGCATTGTCTGCCCatacaatttctttcttgtcgGAGTCTTATATACCATCCAAAATCAAGGTGAAGTG 1082 0.3826 MEGKRLSSESRRLDLLRKIKEFTRAIIQDISNGKSPMILIDRFRNYCYSPSSNCYCGSDLPWGKEVLTFRKETHVHRVDVMLRVLLIIQQLLQENKHSSKRDIYYMHPSVFLEQSVVDHAINDICILMQCSRHNLNVVSVGNGLVMGWIRFFEGEKIFDCISSPNNAHSVPVHVEEVKVFQRLANDQFCKTNRCIVITGRGYPDIPTRRFLRLLIENLRLPVYCLVDCDPYGFDILTTYRFGSMQMAYDTRNLRVPEIQWLGVFPSDFERYSVPKHCLLPLTAEDKKKIEAMLLRCYLQKDVPQWRFELKLMLQKGVKFEIEALSAHTISFLSESYIPSKIKVK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02629 344 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 8 342 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bva12g02629 344 CDD TOPRIM_TopoIIB_SPO 174 331 IPR034136 -
Bva12g02629 344 Pfam Type IIB DNA topoisomerase 77 137 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Bva12g02629 344 Gene3D - 3 140 IPR036388 -
Bva12g02629 344 SUPERFAMILY DNA topoisomerase IV, alpha subunit 75 342 IPR036078 GO:0003677|GO:0005694
Bva12g02629 344 Gene3D - 142 344 - -
Bva12g02629 344 PRINTS DNA topoisomerase VI subunit A family signature 100 111 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bva12g02629 344 PRINTS DNA topoisomerase VI subunit A family signature 114 131 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bva12g02629 344 PRINTS DNA topoisomerase VI subunit A family signature 227 243 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bva12g02629 344 PRINTS DNA topoisomerase VI subunit A family signature 195 216 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bva12g02629 344 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 8 342 - -
Bva12g02629 344 PRINTS SPO11 homologue signature 328 344 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bva12g02629 344 PRINTS SPO11 homologue signature 106 126 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bva12g02629 344 PRINTS SPO11 homologue signature 267 291 IPR013048 GO:0003677|GO:0003918|GO:0042138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02629 Bva-Chr12 19390030 19394311 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02629 K10878 - gmx:100813920 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02629 12 19390030 19394311 Bva12g02629 12 19390030 19394311 ECH