Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02627 ATGGCATTGGCGCCTGTGAGAACCACAGGAGCTATTGCAGCTGCCGCCCTTGTCTCCGTCGTGCTCATCTTTCTCGTCAGCGAGTATCGCTCTAAGTCCAAGATCCCCTCCAAGAAGATCCGCttgaagaaatcaaagaagGGACTTATTGATGCTATAGGTAATACGCCATTAATTCGGATTAATAGCCTTTCTGACGCTACTGGTTGCGAAATTCTTGGAAAGTGCGAGTTTTTGAACCCAGGAGGTAGCGTGAAAGACCGAGTTGCCGTGAAAATCATTGAGGAGGCTCTGGAATCTGGCCAGCTACGTCAAGGTGGAATAGTTACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCCTTACTACAGTTGCTCCGGCCTATGGCTGCAAATGTCATGTGGTTATTCCGGACGATGCTGCCATTGAAAAGGCTCAGACACTTGAAGTTCTTGGAGCTGTTGTTGAAAGGGTGCGACCAGTGTCAATCACTCACAAAGACCATTATGTCAATGTTGCAAGGAGACGGGCAGCAGAAGCAAATGAGTTCGCACTGAAGCATAGGAAAACTTCCCAATTGGACAGCGAGGGTATTGAACAAATTAATGGTTACAGATCAGATGAAGACAGTCACAGCTCAGTTTTTTCTGTTGATTGTCAAGGCGGCTTTTTTGCTGACCAGTTCGAGAATTTGGCAAACTTCAGGGCCCACTATGAGGGTACAGGACCTGAGATTTGGGAACAGACTAATGGAGATTTGGATGCATTTGTTGCAGCTGCTGGCACTGGTGGCACTATAGCTGGCGTTTCCAGGTTTCTCCAGGAAAAGAATCCTAATATCAAGTGCTTCCTCATAGATCCTCCTGGTTCTGGTTTGTTTAATAAGGTGACAAGGGGGGTGATGTACACTAAAGAGGAGGCTGAAGGACGAAGGCTTAAGAATCCATTTGACACAATAACAGAAGGAATTGGGATTAACAGGATAACAAGGAATTTCATGATGGCAAAACTAGATGGAGCTTTTCGAGGCACAGATAGGGAGGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAACGATGGACTATTTCTTGGGAGTTCTTCAGCAATGAATTGTGTTGGAGCTGTTAGAGTAGCACAGTCAATTGGCCCTGGTCACACAATTGTAACCATTCTCTGTGACAGTGGGATGAGACATCTGAGCAAGTTCCACAATTCTGAATACCTGTCTCAGCTTGGCTTGACACCAAAAGCAACTGGGTTAGAGTTCTTGGGTTACAAATA 1280 0.4539 MALAPVRTTGAIAAAALVSVVLIFLVSEYRSKSKIPSKKIRLKKSKKGLIDAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLRQGGIVTEGSAGSTAISLTTVAPAYGCKCHVVIPDDAAIEKAQTLEVLGAVVERVRPVSITHKDHYVNVARRRAAEANEFALKHRKTSQLDSEGIEQINGYRSDEDSHSSVFSVDCQGGFFADQFENLANFRAHYEGTGPEIWEQTNGDLDAFVAAAGTGGTIAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFMMAKLDGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQSIGPGHTIVTILCDSGMRHLSKFHNSEYLSQLGLTPKATGLEFLGYK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02627 426 PANTHER CYSTATHIONINE BETA-SYNTHASE 32 424 - -
Bva12g02627 426 Pfam Pyridoxal-phosphate dependent enzyme 51 393 IPR001926 -
Bva12g02627 426 Gene3D - 53 399 IPR036052 -
Bva12g02627 426 PANTHER CYSTEINE SYNTHASE-RELATED 32 424 - -
Bva12g02627 426 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 42 407 IPR036052 -
Bva12g02627 426 Gene3D - 83 234 IPR036052 -
Bva12g02627 426 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 75 93 IPR001216 GO:0006535
Bva12g02627 426 CDD CBS_like 54 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02627 Bva-Chr12 19382830 19385851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02627 53 400 Miscellaneous Gene Families AT3G04940 29.143 9.86e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02627 K01738 - rcu:8286843 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02627 12 19382830 19385851 Bva12g02627 12 19382830 19385851 ECH