Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02613 ATGAAGACGCAAAAAGCTCCTGCCTTGTTGCTATCACGTGCACTGTCGCGTGCCCTCAGCTCCACCTCCTCAGGATCAGCACCACCATCCCAATCGGCACGACCTTTCCCTCTCAAGACCGTGACGAAAACGAACTTCGAAGCCTCACTTGCTGAGCTCCGCCACCATGTCAGAGCCTCTGATTTTGTCGCCATTGACCTTGAAATGACCGGAGTTACCAGTGCTCCATGGCGCGAGTCCCTGGAATGGGATCGCTTTGACGTTCGCTACCTCAAGGTCAAGGATTCGGCTGACAAATTCGCTGTCGTCCAATTCGGTGTCTGCCCCTTCCGATGGGATCCATCCAACCAGTCCTTCATCGCCTATCCGtacaatttttatgtttttccaCGTCAAGAGCTTGTGGGTTCGGGTCCTTCTTATGAGTTTCTCTGCCAGACTACTTCAATTGATTTCTTGGCTAAATATCAGTTTGATTTTAATGCATGCATACATGAAGGAATATCTTATTTATCCAGAGAACAAGAATCTGAAGCAATAAGGAGTTTGAATTCCATATATGATGGGGAGTTGTCAGATACATGGCCTAAGTTAAAAGATGTTAGAGACGTACCATCGGTCAGCATGGCAGACGTATTGTTCAGTGAACGcatgaaaaacaaattcaGTGAATGGCGTGATGGATTATTACAGGAGCAAAACGGAGAGGACCAATTTCAAGGATTCTCAAACAACTCGAGACAGAAGCTTcaagtaattttctttaagatgCGTCCAGCTCTTAGACTTTATGGATTCACCTCTCATCAACTTAAATTGATTCAGTTGGTCATTAGAAAGCACTTTAAAGATCTTTCTTATGTCAGTGTGAGCAGTGAGGATTCTGGTTTACAAGAAATGGTTGTTTATACAGACTCAAAGGAAGAACTGAACTCACTTCTGGAGGAGGTGAAAGAGCAGAATCACAGGTCCGCAGAGATGAAGATTCGAGCTGCAGTAGGATTTCGTCATGTTATTGATCTCCTGTCCTCAGAACAGAAGTTGATAGTTGGTCACAATTGCTTCCTGGATATTGCCCATATATACAGCAAATTTATTGGTCCTCTTCCAAGCACCGCTGAAGAGTTTTCCTCCTCCGTTAACAAGTACTTTCCTCACTTTGTTGACACCAAAATACTCTTGAACACTAATTTGATGCTCCAGGAAAGGATGAGAAAGTCCAGAAAATCACTATCATCAGCATTTGCCTTGTTCTGCCCACAAATTGCAGCTGGTTCCAAAAGCACTGATCTAGCTTCTGACTCATGCATGAAAGTGGAGGTTCAAGTGAATGATTCAAGGTCATTAAGCTGGAATCCTGGAGGCAAGCATGAAGCAGGCTATGATGCTTTTATGACAGGGTGTGTCTTTGCACAGTTGTGCAGTCATTTAGGAATTGATTTTAGGCTGTATTCATCTTCACAGCATTTATCCTTCAATGAGAAACTTAAGAAGTACATCAACCTTCTCTATCTTAGTTGGTTGAGTGGGGACATTATTGATCTAAGTACTGGTGATAAGGTTGTGGATCCTTCACTGACCTACAGCTTCAAGAGGAAGTAccaaaagattttgtttggGAACGTTGTTATAATATGGGGGTTTCCTTCCGAACTCAAGACAAGCGAAGTAAGAGAATGCATTTCTAAAGTTTTCGGTCTACTTCATGTAGTTTCTGTGTACAGATTGGATAAAACTGCAGTTTTCATTCAGTTTAGCAAGGCAGAACTAGTCTCTGACTTTCTCATGCTGAAGGACACCCTAGAGAGAAGTGACGGTCCTATCTCAGTTTTGCATCCTCTGGCAAAACTCTTGGAAGGTGGAAATACATGTGCTGCATGTTATGACACTTACAAGGAAATCTGTGCTTCACCCGTTTCAGAAATTCTGTTTGCGGATCAGGCAAAGACGGTTGGTATAAAATGGAAGACTAAACTGGTAGAACACCAGGTAGCAGAGAAGAGCGAAGAACATGAAAATTCCAGAATAGAAAATGATGTAAATACAGATGCTAGTGTTTTGGAGAAGACAAAGACAACCACAGAAGACGAGTTAACCGATCTTCCATCTTGTCACGAAGTCTCATCATATGAGGAGATTATAGATTCTTTCTGTGCAGCCAAAGTCCATTA 2171 0.4169 MKTQKAPALLLSRALSRALSSTSSGSAPPSQSARPFPLKTVTKTNFEASLAELRHHVRASDFVAIDLEMTGVTSAPWRESLEWDRFDVRYLKVKDSADKFAVVQFGVCPFRWDPSNQSFIAYPEQESEAIRSLNSIYDGELSDTWPKLKDVRDVPSVSMADVLFSERMKNKFSEWRDGLLQEQNGEDQFQGFSNNSRQKLQVIFFKMRPALRLYGFTSHQLKLIQLVIRKHFKDLSYVSVSSEDSGLQEMVVYTDSKEELNSLLEEVKEQNHRSAEMKIRAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHIYSKFIGPLPSTAEEFSSSVNKYFPHFVDTKILLNTNLMLQERMRKSRKSLSSAFALFCPQIAAGSKSTDLASDSCMKVEVQVNDSRSLSWNPGGKHEAGYDAFMTGCVFAQLCSHLGIDFRLYSSSQHLSFNEKLKKYINLLYLSWLSGDIIDLSTGDKVVDPSLTYSFKRKYQKILFGNVVIIWGFPSELKTSEVRECISKVFGLLHVVSVYRLDKTAVFIQFSKAELVSDFLMLKDTLERSDGPISVLHPLAKLLEGGNTCAACYDTYKEICASPVSEILFADQAKTVGIKWKTKLVEHQVAEKSEEHENSRIENDVNTDASVLEKTKTTTEDELTDLPSCHEVSSYEEIIDSFCAAKVH 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02613 673 Coils Coil 250 280 - -
Bva12g02613 673 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 37 123 - -
Bva12g02613 673 Pfam CAF1 family ribonuclease 41 420 IPR006941 -
Bva12g02613 673 SUPERFAMILY Ribonuclease H-like 32 428 IPR012337 -
Bva12g02613 673 MobiDBLite consensus disorder prediction 616 647 - -
Bva12g02613 673 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 124 609 - -
Bva12g02613 673 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 37 123 - -
Bva12g02613 673 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 124 609 - -
Bva12g02613 673 Gene3D - 40 204 IPR036397 GO:0003676
Bva12g02613 673 Gene3D - 254 470 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02613 Bva-Chr12 19323902 19328252 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02613 K01148 - gmx:100784997 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02613 12 19323902 19328252 Bva12g02613 12 19323902 19328252 ECH