Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02612 ATGGCGCAGGTACTATACCACCAATTCCCTCTCTCTGCCGAAGCCCACAGAACtgcagcttcttcttcttccaagCCAATGAAGCATATATCCGTTTCCACCCCTCAAAAAGGTCCTTTGAAGCGCTTGCAAAAGACCCAGAAACTGAATTTGGAGGTTTCTCCTCATAGAGCTGTGTCAGCTGTAAGATTGATGCGCATAGAGCTCGGTGGTGCTTTTGCTGACCTTTTGAATGAGAAAGGGAAAGGTTCTGGTGAGAATGAGATGGGTTATGTCGAAAGAACTCTTGGATTTCGCACACGGGAATTAAACGATCAGGATCTTAGACTGGTAACAGACATTGTTGGGGGCACAATCCGTTGGAGAAGATATATTGATCATCTTATCAGTTCACTATCTCatgataaaaacatatatggCATGGAACCTCTTCTGTTACAGATTCTACGAATCGGTTTCTATGAGATTGTCAAATTAGATATGCCACACTATGCTGTTGTAGACGAGAATGTGAAGCTTGCAAAAGTTGCTCTTAGACCTGGTGCTGGCAATATGGTCAATGGAATCCTCCGAAAGCTTGTTTTGCTTgagGAAAATCAAAGTCTTCCTTTGCCCAAAGTGGAGGGTGATGATCGCTCTCAAGCTCGTGCTCTTGCAACTCTGTACTCACATCCAGTTtGGATGGTAAGGAGATTGACAAAGTATCTTGGTCAAGAAGAAGCCATTAAGTTGATGATGTGGAATAACAGTGAACCCAGTTATAGCTTAAGGGTGAACCATGCCAAAGGTTTTTCAAGAGGTGATCTTGTGAAACAACTTACTGCATTGAAGGTCTCGCACAAGATTTCGTTGCATTTGGATGAATTTGTCCGTATCAAAACTGGATTGCAGATTGTCATTCATGCTGGCTTGCTCAGAAAAGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTTTGATAGTTTCTGTTATGGATCCTCAACCTGGTGATACCATTGTTGATTGTTGTGCTGCTCCTGGTGGCAAGACCCTGTACATGGCCTCTCATCTAGGTGGACTAGGAAAGATATTTGCAGTTGATGTAAATTCTGGTCGGCTGAGAATCCTTAAAGAGACAGCAAAATTGCACCAAGTAGATGGTGTTATTGCCACCATCCACGCAGATCTTCGTACACTCACTGATAGTGAAGTACTGAAGTCCAATAAAGTTTTGTTGGATGCACCATGCTCTGGACTCGGTGTTCTTTCCAAGAGAGCCGACCTGCGTTGGAATAGGAAACTGGAGGATATGGAACAACTCATAAAATTACAGGATGAGCTCCTGGATTCAGCTTCCAAATTGGTAAACCCTGGTGGAGTACTAGTTTACAGTACATGTTCCATAGATCCCGAAGAGAATGAAGAGCGGGTGACTGCATTTCTTGCAAGACATCCAGACTTCCACATTGACCCTGTAGACCAATATATTCCAGCTGATTTTGTGACAGACCGCGGATTCTATTCCTCAAACCCAGTAAAACATTCACTGGATGGTGCTTTTGCAGCTCGTTTGGTACGAGGGTCATA 1565 0.4256 MAQVLYHQFPLSAEAHRTAASSSSKPMKHISVSTPQKGPLKRLQKTQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVERTLGFRTRELNDQDLRLVTDIVGGTIRWRRYIDHLISSLSHDKNIYGMEPLLLQILRIGFYEIVKLDMPHYAVVDENVKLAKVALRPGAGNMVNGILRKLVLLEENQSLPLPKVEGDDRSQARALATLYSHPVWMVRRLTKYLGQEEAIKLMMWNNSEPSYSLRVNHAKGFSRGDLVKQLTALKVSHKISLHLDEFVRIKTGLQIVIHAGLLRKGLCSVQDESAGLIVSVMDPQPGDTIVDCCAAPGGKTLYMASHLGGLGKIFAVDVNSGRLRILKETAKLHQVDGVIATIHADLRTLTDSEVLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLIKLQDELLDSASKLVNPGGVLVYSTCSIDPEENEERVTAFLARHPDFHIDPVDQYIPADFVTDRGFYSSNPVKHSLDGAFAARLVRGS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02612 521 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 215 519 IPR029063 -
Bva12g02612 521 Gene3D Vaccinia Virus protein VP39 319 521 IPR029063 -
Bva12g02612 521 SUPERFAMILY NusB-like 92 228 IPR035926 -
Bva12g02612 521 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 99 518 IPR004573 GO:0006364|GO:0008649
Bva12g02612 521 Pfam NusB family 91 194 IPR006027 GO:0003723|GO:0006355
Bva12g02612 521 PRINTS Viridiplantae FMU-related RCMT signature 201 214 IPR023268 -
Bva12g02612 521 PRINTS Viridiplantae FMU-related RCMT signature 478 490 IPR023268 -
Bva12g02612 521 PRINTS Viridiplantae FMU-related RCMT signature 86 102 IPR023268 -
Bva12g02612 521 PRINTS Viridiplantae FMU-related RCMT signature 62 85 IPR023268 -
Bva12g02612 521 MobiDBLite consensus disorder prediction 15 39 - -
Bva12g02612 521 Pfam 16S rRNA methyltransferase RsmB/F 322 517 IPR001678 GO:0008168
Bva12g02612 521 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 19 520 IPR023267 GO:0001510
Bva12g02612 521 PRINTS RNA (C5-cytosine) methyltransferase signature 451 467 IPR023267 GO:0001510
Bva12g02612 521 PRINTS RNA (C5-cytosine) methyltransferase signature 304 318 IPR023267 GO:0001510
Bva12g02612 521 PRINTS RNA (C5-cytosine) methyltransferase signature 502 519 IPR023267 GO:0001510
Bva12g02612 521 PRINTS RNA (C5-cytosine) methyltransferase signature 401 413 IPR023267 GO:0001510
Bva12g02612 521 PRINTS RNA (C5-cytosine) methyltransferase signature 333 343 IPR023267 GO:0001510
Bva12g02612 521 Gene3D Sun protein; domain 3 211 317 - -
Bva12g02612 521 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 244 520 IPR001678 GO:0008168
Bva12g02612 521 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 19 520 - -
Bva12g02612 521 Gene3D - 75 203 IPR035926 -
Bva12g02612 521 CDD AdoMet_MTases 331 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02612 Bva-Chr12 19316610 19323349 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02612 K03500 - gmx:100779327 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02612 12 19316610 19323349 Bva12g02612 12 19316610 19323349 ECH