Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02601 ATGTCCGAGGTAGACGATTCTATGTCCGAGGTAGAAGAACAGGAGGAACTGCAgaggaaaaaggaagagaatggAAGCGGACTCGATTATATATTGAGCTTGGAAAGTGTACCCTCCAAACTTCCTCCACGACTCGAAGAACTGAAGACGCGGGTTTTCTGCAAGAGTGATGCTCCCGTGCATACAGATACCATACAGTACTCTGGTGCATACGCAGCATTGAGAGTTGACAATAGTCTACGGTTAGATAATTTCTgccaaaacttcaaaattgaattgattcgACTTACAGATGATGACATGGAGTTTGATATGATTGGGATTGATCCAGCACTTGCCAATGCATTCCGAAGGATTCTTATATCAGAGGTTCCAACAATGGCTATAGAAAGAGTATATATTGCAAATAATACATCCGTTATACAAGATGAAGTTCTTTCCCATAGATTGGGCCTCATTCCAATCAGAGCTGATCCAAGGTTATTTGAATATCCAGATACTACTGGAACTGACAAGAATGAAAAGAACACAATTGTTTTCAAACTGCATGTTCGATGTGAAGTGGGGCAGCCTCGCATTACAGTAAAAACAAGAGAACTAGAGTGGTTACCTCATGGGAGTGAGCTACATTCAGAGGACAACAATCGTGATGCAAGTTCAAAACCAAGAACGTTTACTTCATTTAATTGCAGTCAAGACTCTCTCCCTGAATTTCCTAAAAGTCCTATTGGCATCAAGGATTCAGATATTATAATAGCTAAACTTGGACCTGGACAGGAAATCGAGCTTGAAGCTCATGCAGTTAAAGGCATTGGTAAGACACACGCAAAATGGTCCCCAGTTGCTACTGCTTGGTATCGGATGCTTCCAGAGGTTGTACTCTTGGAAGAGGTTAAGGATGAGCTGGCAGAAGAACTTAAAAACAAATGTCCAGTTGGAGTATTTGATATTGAAGATATTGGAAAAgGAAAAAGAAGGGCCACTGTAGCCAGACCAAGAGCTTGCACTCTCTGTAGAGAATGCATCAGAGGAGGCAAAGAATGGGAGGACCGTGTGTCTTTACGTCGTGTTAAAGATCATTTCATATTTACCATTGAATCAACTGGAGCGTTGCCACCTGAAGAACTGTTTACTGAGGCCGTGAAGATTTTGGAAGACAAGTGTGAACGTGTGATTATGGAGCTCTCttg 1190 0.4017 MSEVDDSMSEVEEQEELQRKKEENGSGLDYILSLESVPSKLPPRLEELKTRVFCKSDAPVHTDTIQYSGAYAALRVDNSLRLDNFCQNFKIELIRLTDDDMEFDMIGIDPALANAFRRILISEVPTMAIERVYIANNTSVIQDEVLSHRLGLIPIRADPRLFEYPDTTGTDKNEKNTIVFKLHVRCEVGQPRITVKTRELEWLPHGSELHSEDNNRDASSKPRTFTSFNCSQDSLPEFPKSPIGIKDSDIIIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEEVKDELAEELKNKCPVGVFDIEDIGKGKRRATVARPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGALPPEELFTEAVKILEDKCERVIMELS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02601 396 PANTHER DNA-DIRECTED RNA POLYMERASE 31 396 - -
Bva12g02601 396 PANTHER BNAA01G22480D PROTEIN 31 396 - -
Bva12g02601 396 SMART rpoldneu2 100 394 IPR011263 GO:0003899|GO:0006351
Bva12g02601 396 Coils Coil 4 24 - -
Bva12g02601 396 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 102 388 IPR011263 GO:0003899|GO:0006351
Bva12g02601 396 Gene3D - 126 276 IPR036643 -
Bva12g02601 396 MobiDBLite consensus disorder prediction 1 24 - -
Bva12g02601 396 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 125 280 IPR036643 -
Bva12g02601 396 SUPERFAMILY RBP11-like subunits of RNA polymerase 87 395 IPR036603 GO:0006351|GO:0046983
Bva12g02601 396 Gene3D - 91 387 IPR036603 GO:0006351|GO:0046983
Bva12g02601 396 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 90 395 IPR022842 GO:0003899|GO:0006351
Bva12g02601 396 Pfam RNA polymerase Rpb3/RpoA insert domain 132 279 IPR011262 GO:0003899|GO:0006351|GO:0046983
Bva12g02601 396 CDD RNAP_I_II_AC40 89 394 IPR033901 GO:0001054|GO:0001056
Bva12g02601 396 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 114 154 IPR001514 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02601 Bva-Chr12 19270455 19274162 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02601 K03027 - gmx:100786622 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02601 12 19270455 19274162 Bva12g02601 12 19270455 19274162 ECH