Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02558 ATGTGTGAGTTGGAAGTCTGGGCCGAGCAACAAGCTCCAGAGGAGCTAACAGGAGCAGCCAAGGATGTTGGCAGAACACAGCTTCCTTCAGAATTGTTTCAATCCAAGGTAAATGAAATTGCTTGGAACATGACAGGAGAGATGTTCTTTCTAACAACAGGAAATGGGACTGTTGAAGTACTTGCGCACCCATCTCTTCGACATCTTGATACTCTCATGGCTCATACAGCTGGTTGCTATTGCATTGCAATTGACCCAGTAGGAAGGTATTTTGCTGTTGGAAGTGCTGATTCCCTAGTCAGCCTATGGGATATCTCGGAGATGCTCTGTGCACGGACATTTACAAAGCTAGAGTG 356 0.4607 MCELEVWAEQQAPEELTGAAKDVGRTQLPSELFQSKVNEIAWNMTGEMFFLTTGNGTVEVLAHPSLRHLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCARTFTKLE 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02558 118 Gene3D - 17 117 IPR015943 GO:0005515
Bva12g02558 118 SMART WD40_4 65 104 IPR001680 GO:0005515
Bva12g02558 118 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 106 - -
Bva12g02558 118 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 113 IPR001680 GO:0005515
Bva12g02558 118 PANTHER THO COMPLEX SUBUNIT 3 THO3 30 118 IPR040132 GO:0006406
Bva12g02558 118 SUPERFAMILY WD40 repeat-like 33 115 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02558 Bva-Chr12 19056290 19057647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02558 35 114 Miscellaneous Gene Families AT5G08390 23.750 9.35e-07 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02558 K12880 - jre:108985900 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02558 12 19056290 19057647 Bva12g02558 12 19056290 19057647 ECH