Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02557 ATGTCGTTGTCCGGCGGCGTAGGTAGCAGGTACATGGCTTTCTCGCCGTCACCATCACCGTCAGCGCCTCACTCCCCTCATCTCTCTGGTCTTCGCTCTGCTGCTTCCACTGCTCTCGTCGAACAAGAAAAATATCTTTCTGAGTTATTAGCAGAACGCCAGAAGATTATTCCCTTCATAACTGTGCTTCCACATAGCCATCGATTGTTAAACCAAGAAATTTTGCGTGTAACCACACTGTTGGGGAATGCATCAGTTTTAGGTCAAAGTGGGCTTGAATGTGCTAGCCCCCTGGCTACTGGAGGAATATTTTCAAATGGAGGTGCCGATATGAATGGATGGGCATCACGATTTCGATCAGAAATCCCGGGCTTGCTACAGCCCTCATCAGCCCCGAACTGGTTGAGTTCACAAGGTAGCTCTTCCGGTCTTATTGTTAAGAAGACACTTAGGGTGGATATCCCTGCAGAGAAATATCCCAATTATAACTTCGTTGGTCGCCTCCTAGGTCCTAGAGGGAACTCTCTAAAGCGTGTGGAGGCAAGTACTGATTGCCGTGTCTTGATCAGAGGCCGTGGTAGCATTAAGGATCCAACTAGGgAAGAATTGATGAGAGACAAACCAGGGTATGAGCATCTGAATGAACCTCTCCATATTCTAGTTGAGGCAGAATTGCCAGTTGAAATAGTGGATGCTCGCCTGATGCAGGCACGTGAAATACTAGAAGATTTGCTTAAGCCTGTGgaTGAATCTCAAGATTTCTACAAGAAGCAGCAGCTCCGGGAGCTGGCACTTCTGAATGGCACTCTCCGTGAAGAGGGTTCTCTTATGACAGGGTCTGTTTCACCCTTCCACAACAGCCTTGGTATGAAGAGGGCCAAGACGACGGTGTA 893 0.4804 MSLSGGVGSRYMAFSPSPSPSAPHSPHLSGLRSAASTALVEQEKYLSELLAERQKIIPFITVLPHSHRLLNQEILRVTTLLGNASVLGQSGLECASPLATGGIFSNGGADMNGWASRFRSEIPGLLQPSSAPNWLSSQGSSSGLIVKKTLRVDIPAEKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPTREELMRDKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESQDFYKKQQLRELALLNGTLREEGSLMTGSVSPFHNSLGMKRAKTTV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02557 297 Gene3D K Homology domain, type 1 37 276 IPR036612 GO:0003723
Bva12g02557 297 SMART kh_6 146 239 IPR004087 GO:0003676
Bva12g02557 297 PANTHER RNA-BINDING PROTEIN RELATED 8 296 IPR045071 -
Bva12g02557 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 151 271 IPR036612 GO:0003723
Bva12g02557 297 CDD SF1_like-KH 151 271 - -
Bva12g02557 297 Pfam Homodimerisation region of STAR domain protein 43 81 IPR032377 -
Bva12g02557 297 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 8 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02557 Bva-Chr12 19050252 19055047 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02557 K14945 - tcc:18593181 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02557 12 19050252 19055047 Bva12g02557 12 19050252 19055047 ECH