Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02556 ATGGGAGCTGTAATAGGAAAAGTTGAACCCACAGAAATGGTTTGGTTACCAGAATCCAAGATTGAGGCTAAAATGGTTCAAGCAATGCAGCGGAGAGCATCTCAAGGAAGTTCCATGAAATCATTCAACACTATAATCTTGAAATTTCCAAAAATCGATGAGAGCTTCAGAAAATGCAAATCCATTTTTGAGCAATTTGATGAGGATTCTAATGGAGTAATAGATCGTGACGAGCTGAGAAAATGTTTCCAAAAGTTGGACATTTCTTTCAGTGAGGAGGatattaatgatatatttgaaGCATGTGATATTAATGAAGATTTGGTAATGAAGTTCAGTGAGTTTATCGTACTTCTCTGCCTTGTCTATCTTCTTGACCCAGCTGCTCTTCTTGCCAAATCAAAAATTGGAACGCCAAATCTGGAGGCCACATTTGAGCCTTTGGTTGATGCATTTGTATTCTTGGACAAGAATAAGGATGGCTATGTCAGCAAAAGTGAGATGGTCCAAGCCATAAATGAAACGACAGGAGGAGAGCGTTCTTCTGGAAGAATAGCAATGAAAAGATTTGAGGAGATGGATTGGGATAAGAATGGAATGGTGAACTTTAAGGAGTTTCTTTTTGCATTTACCCGTTGGATTGGAATTGATGAAGCTGAAGATGAGGAAGATGAGTA 677 0.3811 MGAVIGKVEPTEMVWLPESKIEAKMVQAMQRRASQGSSMKSFNTIILKFPKIDESFRKCKSIFEQFDEDSNGVIDRDELRKCFQKLDISFSEEDINDIFEACDINEDLVMKFSEFIVLLCLVYLLDPAALLAKSKIGTPNLEATFEPLVDAFVFLDKNKDGYVSKSEMVQAINETTGGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWIGIDEAEDEEDE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02556 225 CDD EFh 58 119 IPR002048 GO:0005509
Bva12g02556 225 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Bva12g02556 225 Pfam EF-hand domain pair 148 210 IPR002048 GO:0005509
Bva12g02556 225 Pfam EF-hand domain pair 57 117 IPR002048 GO:0005509
Bva12g02556 225 ProSiteProfiles EF-hand calcium-binding domain profile. 181 216 IPR002048 GO:0005509
Bva12g02556 225 SMART efh_1 185 213 IPR002048 GO:0005509
Bva12g02556 225 SMART efh_1 94 122 IPR002048 GO:0005509
Bva12g02556 225 SMART efh_1 147 175 IPR002048 GO:0005509
Bva12g02556 225 SMART efh_1 58 86 IPR002048 GO:0005509
Bva12g02556 225 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Bva12g02556 225 PANTHER CALCIUM-BINDING PROTEIN CML21-RELATED 1 224 - -
Bva12g02556 225 Gene3D - 18 213 - -
Bva12g02556 225 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Bva12g02556 225 SUPERFAMILY EF-hand 52 212 IPR011992 -
Bva12g02556 225 PANTHER TROPONIN 1 224 - -
Bva12g02556 225 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02556 Bva-Chr12 19047023 19049721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02556 1 216 EF-hand Containing Proteins AT4G26470 67.431 2.62e-107 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02556 K13448 - vvi:100256640 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02556 12 19047023 19049721 Bva12g02556 12 19047023 19049721 ECH