Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02555 ATGGCACAACTTTTGaacaaaaagatattatcTGAGTATGTAGTGCAATCAAAATTTCAAGCTTTCTACTCTGACCCCGATAGTATAGTTTCCAACAACGGTGATTGGATGGCGTCAAAACGGATCAACAAGGAATTGAAGGACCTGCAGAAAGACCCTCCTGTATCTTGCAGTGCAGGCCCTGTTGCTGATGACATGTTCCTTTGGCAAGCTACAATTATGGGCCCTTCAGATAGCCCATTTGCTGGAGGTGTATTTCTGGTATCAATTCACTTCCCTCCAGATTATCCCTTCAAACCACCAAAGGTTTCATTTCGCACAAAGGTGTTCCACCCTAACATCAATAGTAATGGTAGCATCTGCCTTGACATTCTCAAAGAGCAATGGAGCCCTGCCCTCACAATATCtaagGTGCTCCTTTCAATATGCTCTCTGCTGACTGATCCCAACCCAGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAAGCTGACAGAGCCAAGTATGAAGCTACTGCTAGGTCATGGACCCAGAAATATGCCATGGGCTA 554 0.4404 MNKKVRRLESTQSIVSNNGDWMASKRINKELKDLQKDPPVSCSAGPVADDMFLWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKADRAKYEATARSWTQKYAMG 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02555 169 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 95 110 IPR023313 -
Bva12g02555 169 SUPERFAMILY UBC-like 16 168 IPR016135 -
Bva12g02555 169 CDD UBCc 24 163 IPR000608 -
Bva12g02555 169 Gene3D Ubiquitin Conjugating Enzyme 14 169 IPR016135 -
Bva12g02555 169 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 24 166 - -
Bva12g02555 169 Pfam Ubiquitin-conjugating enzyme 26 162 IPR000608 -
Bva12g02555 169 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 22 168 IPR000608 -
Bva12g02555 169 PANTHER BNAA01G32320D PROTEIN 24 166 - -
Bva12g02555 169 SMART ubc_7 25 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02555 Bva-Chr12 19043462 19046875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02555 23 135 Miscellaneous Gene Families AT3G17000 35.897 4.79e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02555 K06689 - twl:119988269 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02555 12 19043462 19046875 Bva12g02555 12 19043462 19046875 ECH