Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02554 ATGTCAgGCATTGAAGGGCTTGGCAATCATGatgaaattaaagagaggCGATCGGATTTTGAGAACTCTGAAGATGAGAGGCGACGATCAAAAATTGGAAACCTCAAGAAGAAAGCAATTAATGCTTCGTCTAAGTTCACTCATTCTTTGAAGAAacgaggaaaaagaaagatagattacAGGATTCCCTCAGTTTCCATTGAGGATGTGCGGGATGCAAAAGAGGAAAATGCTGTCCAAGAATTGCGTCAAATACTAATTGAGAGGGGATTGTTGCCACCCAGGCATGATGAATATCATACATTGTTAAGGTTTCTGAAAGCTAGGGACTTTAACATAGAGAAGACAGTCCAAATGTGGGAAGAAATGCTTATTTGGAGGAAAGAATATGGAACTGACACCATCCTAGAGgattttgaatttgaagagcTGGAAGAAGTATTACAATATTATCCTCAAGGGTACCATGGAGTTGATAAGGAAGGTAGACCAGTTTACATTGAGAGACTTGGAAAAGCTCATCCAAGCCGTCTCATGCGCATCACCACAATTGATCGATATTTAAAATACCATGTCCAGGAGTTTGAGAGGGCTCTACATGAGAAATTTCCTGCATGTTCAATTGCAGCAAAGAGGCAGATTTCTTCTACGACTACAATATTGGATGTACAAGGCTTGGGAATGAAAAATTTCTCCCGAACTGCCGCAAGTCTCTTGGCTGCCGTGTCAAAAATAGACAGCAATTACTATCCAGAGACACTACATCGAATGTATATTGTCAATGCTGGTCCTGGCTTCAAGAAAATGCTTTGGCCTGCTGCACAGAAGTTTCTCGATGCCAAAACTATTGCGAAGATACAGGTTCTGGATCCCAAGTCTTTAGGTAAACTCCTGGAAGTCATCGACTCTAGTCAGTTGCCAGACTTTTTGGGTGGCTCTTGTGCATGTCCTGGAGAAGGTGGATGTCTTAGATCTAACAAGGGTCCGTGGAATGATCCGAATATCATGAAGttGGTACTTAATGCGGAAGCAACATTCGTGAGGCAAATTACCAGGGTCTCCaatgaacaaaagaaatttgattcttATATTCAGATACGCCCACTGAAGGGAAGGACCAGTGATGCATCAACTGCAGAATCAGGGTCCGATATGGATGATCCCTGTTCTCCCGTGGGACGAAGGGGCAGTACTTGTCCTCGTTTAGCCCCGGTTGATGAAGAAGTCAAACTTTCAGATCCCAGCACCTACTACAGTTGTGATGATAGCATTCCTGCAGTTGAGAAAGTGATCAAAAGTGATCAATTTCCCCTTTCTCACGATCAACCACTTCAACAAGATGAGACGAGAAATATTGCTTGTAGGGAAAATTCAGAAGGAACATCAGTCAGCCATTGGGTTAATATGGTCAAAGAAAACATAGTAAAAAGGGACTACTTATGTGTGACAAGAACAACGATATCTTTCTTGGATAGACTTGTTACATTCTTCCGCTCCCTACgatttgaattttggagaACACCGAACAATGTTTATCCATCTAATTCATTGGAACATAATGCGAGTAGCCATTCACCAGCTGTTCAAGTGAACGATGAAGGGGATCATATTGATTCATGTGTACAGCGTCTTCAGAGACTAGAAAAAGCATTTGAGGAACTTAGCAACAAACCTGCTGATATGCCTCCAGGAAAGGAGCAAATGCTTATGGAATCCTTAGATAGGATAAAGTCTGTTGAGTTTGACCTTGAAAAGACTAAGAGGGCACTACATGCTACGGTGATGAAGCAGCTTGAGATTTCCGAGTTGCTAGAGAACTTGCGGGAGTCAAAATTTCGGcGAAGAAGACTATTATGTTA 1859 0.4013 MSGIEGLGNHDEIKERRSDFENSEDERRRSKIGNLKKKAINASSKFTHSLKKRGKRKIDYRIPSVSIEDVRDAKEENAVQELRQILIERGLLPPRHDEYHTLLRFLKARDFNIEKTVQMWEEMLIWRKEYGTDTILEDFEFEELEEVLQYYPQGYHGVDKEGRPVYIERLGKAHPSRLMRITTIDRYLKYHVQEFERALHEKFPACSIAAKRQISSTTTILDVQGLGMKNFSRTAASLLAAVSKIDSNYYPETLHRMYIVNAGPGFKKMLWPAAQKFLDAKTIAKIQVLDPKSLGKLLEVIDSSQLPDFLGGSCACPGEGGCLRSNKGPWNDPNIMKLVLNAEATFVRQITRVSNEQKKFDSYIQIRPLKGRTSDASTAESGSDMDDPCSPVGRRGSTCPRLAPVDEEVKLSDPSTYYSCDDSIPAVEKVIKSDQFPLSHDQPLQQDETRNIACRENSEGTSVSHWVNMVKENIVKRDYLCVTRTTISFLDRLVTFFRSLRFEFWRTPNNVYPSNSLEHNASSHSPAVQVNDEGDHIDSCVQRLQRLEKAFEELSNKPADMPPGKEQMLMESLDRIKSVEFDLEKTKRALHATVMKQLEISELLENLRESKFRRRRLLC 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02554 619 SUPERFAMILY CRAL/TRIO N-terminal domain 72 139 IPR036273 -
Bva12g02554 619 SMART CRAL_TRIO_N_2 98 123 IPR011074 -
Bva12g02554 619 MobiDBLite consensus disorder prediction 8 32 - -
Bva12g02554 619 Coils Coil 537 557 - -
Bva12g02554 619 Gene3D - 131 343 IPR036865 -
Bva12g02554 619 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 610 - -
Bva12g02554 619 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 143 318 IPR001251 -
Bva12g02554 619 Gene3D - 59 130 - -
Bva12g02554 619 Pfam CRAL/TRIO, N-terminal domain 98 122 IPR011074 -
Bva12g02554 619 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 16 610 - -
Bva12g02554 619 MobiDBLite consensus disorder prediction 371 397 - -
Bva12g02554 619 Pfam CRAL/TRIO domain 149 312 IPR001251 -
Bva12g02554 619 CDD SEC14 147 312 IPR001251 -
Bva12g02554 619 MobiDBLite consensus disorder prediction 1 34 - -
Bva12g02554 619 SUPERFAMILY CRAL/TRIO domain 142 337 IPR036865 -
Bva12g02554 619 SMART sec14_4 143 315 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02554 Bva-Chr12 19029104 19034821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02554 96 309 Acyl Lipid Metabolism Gene Families AT1G55840 31.651 7.57e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02554 - - aprc:113846355 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02554 12 19029104 19034821 Bva12g02554 12 19029104 19034821 ECH