Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02308 atgcacgGTCGCCTTCGCAAAGCTTTGAAACCAGAGGATGCAGCAGCTCTGTCAacgaaaattgaaaaactccGTTCACTTCAATCTCAGTTTCTCGCCAATCACCACAATCGCACaTATACTAAGGAAGCTCTAGAGGTAAGTGCCAAGCTTCTTCAGATCAATCCAGAATCTTACACGGCATGGAACTACAGAAAGCTTGCCGTCGAACACTATCTCTTCCAATCTCAGTCTGATCCTGATTCTGTCAATTCCATTTTCGATGAAGAACTCAAAGTGGTGGAGAATGCATTGAGGCAGAACTTTAAGTCTTATGGAGCATGGCATCATCGGAAATGGGTGCTGAGCAAGGGATATTCATCCATAGATAATGAGTTGCGCCTTCTGGAACGTTTCCAGAAGGCTGATCCTCGAAATTTCAATGCATGGAACTACCGAAGGTTTGTTGCTGAACTAATGAAAAGATCAGATGAGGAAGAGTTCAATTATACAGAAGATCTGATAGGGGCAAATTTTAGCAATTACTCTGCATGGCATAATCGTAGcATACTTCTATCCAAGTTGCTACAGAAGGGGAGTGAAGGATATTTCCCTAAAGAGAAGGTTTTAAATGAGGAGTATGAACATGTTCACAGTGCACTCTTTACTGACCCAGATGATCAGAGTGGTTGGTTTTATCATCTTTGGCTTCTTGATCAAACAGTGAAAACAGATGCTCCTATACTTGTTTCATCTTGGCCTTCAAGTGGATCAAATATCACTCTACAGGGAGATAACTGCCTTCACGGTTATGGTTTCTCCCTGTTAAGTGGTGCACTGTCAGACGCAAGAACACTTCCTATCATTCTTTACTTCAATCAATCCGTTGAAGGCATTAACTCATCCACAGTAGTTGTTAAATCTGAACTTAGCATAGAAAGGGATTTTGTTTGGAAACCACTCTCAACAAGTAACTTGAAAACTGCTCAAGTTTGGGTTACATATCTAAATCTCAGAAATATTGAGTTCCATCCATCAAAAACTTGCCCTGTAGAGATCAGCGTTGGACATTCTCCGGGTATTGTATCTTCAAGTGGTTGTCATTACGGCCATCCTTCCCAAATAGCCTTTGAATTGTGTGTACAGACAACTTACACAGAACCTGCTGAAGCACAGGATGTAAAAACGATTTTCTGGGgggatgaaaattttcaaaaatttgtgCATTGTCAGGAATCAGATTCCATTGTTTCAGTTGATgaactaactactgagaatgACCTTACTCCAACAACTTCCAATTGGTATGCAGAGATTATTGCTAATGAAATAACTGTTTTCCGGGAACTATTGTCTCTACTTGACTGTAAAATTGGAAAGCTTACACTCGCAAGACTGTTGACTGCTAATGATTCAGTATCATCTCCACTTGCTAAAAGAATGGTTCATGCGGAAGAAGTCCTTGAACTTTACAGTGATCTGATGAAATTGGATCCAACGCATTCCATATATTACAAGGATGAACATAGCCTAACACTGCTCCGGCGGATAACCTCAACAAAGGTTTCCTTACTGACATACTGTCGCAACTATAGAGACGCAACAGACAGTGTTGCTCGTTACGTCTGTCTACGATTACAGAACCTATCATTATCACGGATAGGATCCTTTGAGAATTTATCGTGGGTGCAAATGCTAGACCTCAGCCACAATGAACTTAGATCGGTTGAAGGATTGGAGGCCATGCAACTTCTCTCTTGCTTAAATTTAAGTCACAATAAATTTGGTAGTTTCACTGCTCTGGCTCCTCTCAGATTGATCAAATCGCTAAAAGCGCTGAATATTTCTTACAACGAGATAGGTTCACACTCTATAGACACAAGAAGATACCTGTGTTCTTCTCCTTTGTGTCATACTGAAGAATTTCCTTGGGATCGGTTCAAAGTCCTCCTTGGCAGTGCCAATGTCTCAAATTTTTGGGAACCTTTCCTAACTTTTGAAGGCTTAAATTTGACACAACTTGACATTACAGGAAATACAGTTGCCGATGAAACCTTCAGATCATTTCTTGTCAAAGTTTTGCCTGCACTAAGGTGGCTGGACGGTGAAGAATTACCCTG 2099 0.3964 MHGRLRKALKPEDAAALSTKIEKLRSLQSQFLANHHNRTYTKEALEVSAKLLQINPESYTAWNYRKLAVEHYLFQSQSDPDSVNSIFDEELKVVENALRQNFKSYGAWHHRKWVLSKGYSSIDNELRLLERFQKADPRNFNAWNYRRFVAELMKRSDEEEFNYTEDLIGANFSNYSAWHNRSILLSKLLQKGSEGYFPKEKVLNEEYEHVHSALFTDPDDQSGWFYHLWLLDQTVKTDAPILVSSWPSSGSNITLQGDNCLHGYGFSLLSGALSDARTLPIILYFNQSVEGINSSTVVVKSELSIERDFVWKPLSTSNLKTAQVWVTYLNLRNIEFHPSKTCPVEISVGHSPGIVSSSGCHYGHPSQIAFELCVQTTYTEPAEAQDVKTIFWGDENFQKFVHCQESDSIVSVDELTTENDLTPTTSNWYAEIIANEITVFRELLSLLDCKIGKLTLARLLTANDSVSSPLAKRMVHAEEVLELYSDLMKLDPTHSIYYKDEHSLTLLRRITSTKVSLLTYCRNYRDATDSVARYVCLRLQNLSLSRIGSFENLSWVQMLDLSHNELRSVEGLEAMQLLSCLNLSHNKFGSFTALAPLRLIKSLKALNISYNEIGSHSIDTRRYLCSSPLCHTEEFPWDRFKVLLGSANVSNFWEPFLTFEGLNLTQLDITGNTVADETFRSFLVKVLPALRWLDGEELP 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02308 699 ProSiteProfiles Leucine-rich repeat profile. 577 598 IPR001611 GO:0005515
Bva12g02308 699 ProSiteProfiles Leucine-rich repeat profile. 555 576 IPR001611 GO:0005515
Bva12g02308 699 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 Pfam Protein prenyltransferase alpha subunit repeat 204 233 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 Pfam Protein prenyltransferase alpha subunit repeat 88 116 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 Pfam Protein prenyltransferase alpha subunit repeat 123 151 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 Pfam Protein prenyltransferase alpha subunit repeat 158 187 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 Gene3D Protein prenylyltransferase 1 248 - -
Bva12g02308 699 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318|GO:0018342
Bva12g02308 699 SUPERFAMILY Protein prenylyltransferase 19 501 - -
Bva12g02308 699 Gene3D Ribonuclease Inhibitor 521 699 IPR032675 -
Bva12g02308 699 PANTHER - 1 609 - -
Bva12g02308 699 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 609 - -
Bva12g02308 699 SUPERFAMILY L domain-like 532 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02308 Bva-Chr12 17529073 17533635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02308 K14050 - gmx:100807900 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02308 12 17529073 17533635 Bva12g02308 12 17529073 17533635 ECH