Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02293 ATGATGACGACGTCCCCGCGCAGAGATCTGCAAGTGCTCGATTTCAAGGAAGAGGACGAGGATGTCGACCTAGCCTCTGGACAACGCCTCGAGGAGTTAAAAAGCCCTGACCCCGACGATCAATCCACATTCAAAGGCGAACTTCTGAGTCACGAGCAACTGAAGCGTATAACTTGCATTGAGTGTTGGTCTTCTGAGATTTTAATGTGGTTTCCTTTATATTGCTGTCCTAATAATTCTGATGACAAGAATGTGGGAGTTGTTCTTTATCCTGATTATGTCATGTACCggaataattattatatgggGCCACAGTTGACATTTTCACATAGTTGCTTCAAGATCAATGGTTCAACTGCATCTCTAAAGCAAGGGACCTTCAATCTTGAATGGGCGGTTGATGATCTCATTTATGTTCAGTGTCAGTTGTTTCAAAATAATGGAGTGGCCATGATAAAGCTTCGAGTGATATCAAATCTTGAAGGCAACTCAAATAATGTAATTGGCACTTCAGGCATTGAGGAGTTGAAGATTGTAGTTTCAGGATCCAGTTGGTCCCTGAGACATAAACAAATCACCTCTCTTAATGAAAAGTACATGGCTATTTGGAATGTTGTTCTCGGGATGGACATGGAAGATGATGAAACTGATTCACTTGGACAAAGCTCTTACTTCCCCAATTTTGATAAgccttttgaagaaattatctACCCGAAAGGGAATCCAGATGCTGTTTCCCTAAGTAAGAGAGATGTTGATCTATTTCAACCTGACACATTTGTCAATGGCACAATTATTGATTTCTACATCAAGTATCTAAAGAATCAGATACAAGAAGAGGAAAAGCATAGGTTCCATTTTTTCAATAGTTTTTTCTTTAGGAAGTTGGCTGATATGGACAAAAATCCATCAAGTGCTTCTGACGGCAAAGCAGCTTTTCTACGTGTTCGTAAAtggacaagaaaaataaatttatttgaaaaggattatatttttatacctGTAAACTTCAATTTAATAGTTATACGCCATCCTGGTGAAGTGAAATTTATGATGAGACATATTGCAGACAATCACTGGCACAAGTCACTTAAAGTAGCTTGTATATTGCGTATGGACTCTGTCAAAGGAACTCATAGTCGCCTAAAAAACCTTTTACAAAGTTATTTGTTGGAAGAATGGAAAGAACCTCCAAAGGATACATGGGAAGAAGCCCTTTCTTCTAGATTCTTCAATGTCCGCTTCCTCCCGCATCGTCTATGGATCCTCAATCGTTTAACAATTCAGGCTTGGTTCTCAGGGAGCTTTTCGAACCGGGAGCTACAGAAGGAGCACTACTGGGGCATGCATGATAGCAACGAGAATGGAACTCTCGACTCTTCCCGTGAAGAGACTTCTATAATACCAATGCGTCAAGTTTCTGATGCAGTAGATGACAGAGCTACTTGTGATGATGTCCAGATGGTAGTTGACGTGGCACCTGACTTTTGTGAAGACCAAGCTGCAAAGAGAAGGAGGTCCTGCCAGAAGAGTCCCATTTGCAAACATGatgataattttgaata 1565 0.3885 MMTTSPRRDLQVLDFKEEDEDVDLASGQRLEELKSPDPDDQSTFKGELLSHEQLKRITCIECWSSEILMWFPLYCCPNNSDDKNVGVVLYPDYVMYRNNYYMGPQLTFSHSCFKINGSTASLKQGTFNLEWAVDDLIYVQCQLFQNNGVAMIKLRVISNLEGNSNNVIGTSGIEELKIVVSGSSWSLRHKQITSLNEKYMAIWNVVLGMDMEDDETDSLGQSSYFPNFDKPFEEIIYPKGNPDAVSLSKRDVDLFQPDTFVNGTIIDFYIKYLKNQIQEEEKHRFHFFNSFFFRKLADMDKNPSSASDGKAAFLRVRKWTRKINLFEKDYIFIPVNFNLIVIRHPGEVKFMMRHIADNHWHKSLKVACILRMDSVKGTHSRLKNLLQSYLLEEWKEPPKDTWEEALSSRFFNVRFLPHRLWILNRLTIQAWFSGSFSNRELQKEHYWGMHDSNENGTLDSSREETSIIPMRQVSDAVDDRATCDDVQMVVDVAPDFCEDQAAKRRRSCQKSPICKHDDNFE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02293 521 ProSiteProfiles Ubiquitin-like protease family profile. 245 521 IPR003653 GO:0006508|GO:0008234
Bva12g02293 521 Pfam Ulp1 protease family, C-terminal catalytic domain 260 400 IPR003653 GO:0006508|GO:0008234
Bva12g02293 521 Gene3D Adenoviral Proteinase; Chain A 227 418 - -
Bva12g02293 521 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 67 420 - -
Bva12g02293 521 SUPERFAMILY Cysteine proteinases 237 401 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02293 Bva-Chr12 17448016 17453391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02293 K08596 - gmx:100800444 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02293 12 17448016 17453391 Bva12g02293 12 17448016 17453391 ECH