Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02284 ATGCGTGTTACCGGGGATATAGGGTTTTCAAGCCTGGTCCTTGTGGTGGTTTGTTTGGTAATACCGATAATCGGGTTTGTCATTCGCCGGAAATGGCATCATGCAGTGGCCAGAAAGGAGGAGATCAAGAGGCTTCTGATTTTGGCGTCCGAGGAGGCTGCTAGGGCCGAGCTCGAGGCCTCCTATGAGCACGGCACCGTTTCATTTCCAAAGAATAATCAATGTGCAGTGTGCTACCGCCCCACCACAACGCGGTGTGCCCGTTGTAAAGCAGTTCGCTACTGttCTGGTAAGTGCCAAATTATTCATTGGCGTCAAGGTCACAAGGAAGAATGCTGTCCTCCCAGCACCACTCACCGGGATGATGATGTTGTAAGGGATTCTGGCAAGGCAGCAGCAGAGCAAGGCCGTCTTGAAATTCATGGTGAGCTTAGTGATCTGGGCAAGAAACCAACAAAACAAGATCACTTTGGAATTCAGGTCGAGAACTCCAAGATTGAGGGCACACATTCTGAACTATCATCTAAGAAACCGTCATCAATTGATATTAGTTGTTCTTCTGAAGTTTCATGTGGAAAAGATGACAATATTAGAGTTGAGCCTCTTGCTGAGGGAAGTATAGCAGATTCTAATTCTGAATCATCTTGTGACTCATTTTCTGGATTTTCAGCTTCCAATACTTCTAGCGAATCATCTGATGATGCCTCTGTCTGTGAGAGTATCATCTCAAATGAGCATGAGAGATCAGAGAAACATACTTTTGTTAGTCCCACCCTTCACATGCTAGATACTACTTCAGGTGATAATAGCGTGGGTATAACTGTGCCATCTTCACCAAAGTTTGCTGCTTTGCTTGATTCTGTGGATGGTTTTTCTACAATGGataatttcaatcaaattagaTCTGGTTTTATTGAAGAGAGTAAGCTTGCATCCAATGGTACTTCAGGTTTGAGAACATGCAAAGGGGCAATGAATGAGCATTGTATGGTGTCTTCTAGTTTCTGGGATAAAGCTCTTGATTTGAGGGGGTCTACAGGTGATGCTGATGGTGACTCTCTTCCATTCGACTCCAATAAATCTACTGGTGATATAAAATCTGAATCTGGATCCTCCCTTTTGTTTTCATCCAGAAAGGTGGCTACCTTAGATGCGCGAGATCCAGAGGCAAAAAGTTCTTTTTCTGATTATTCTTCTCTGAATCCTGTCAAGAACAATATACCAAGTGCAAGATCGGTATTACAAGAGAATGGCTGCAAGGAGTCTTCAAAAATGAGGTGTTCATCTTCCATAAACAGCAAAGGGTCTGATTCTGATTCTACCAGTCATTCTGATAAGTTGGACTCTAGATCTTATGTCCATAAATTTTCTAGTATACGTGAAGATTCTGGGTGTGCTGATGCTTCATCCCCCAGAAAGTTGCAACCAGTAGAGTCAAAGGCTTCAAATCATGTTCTGGATGGCCCTGGCAGCACTTCACACCTGTTGAAGTCAGTTGAAGTTATACGTGTACCTCATGCATTTGCTGATGCCCAGTTAGATTCTAGAACTGAAGAGCAGACACATTCCAATGCAAGATTTGTGAATAATGGTGTTCAATCTAGTACTACTGCTTCATCTCAAGTTGCAAGCTGTTCCCCAAATTCTAAGAATGGTTTGAAAACATCTGTATTGAAAGTTGTTGATCAGTTTAGAGGATCTAATCTGTCAAAACGCTCCCCTCTAGCTGTTGGTAGCAATATTGCTGGAAGATACAGTGACAAGGGTCTCTTTCCATACGACTTGTTTGTCAAGctttttaattcaaacaaGGTGGAATTGCGACCATTTGGTCTCATAAATTGTGGTAACAGCTGTTATGCTAATGCAGTACTCCAGTGCTTGGCGTTTTCACCTCCCCTGACAGCTTATTTACTTCAAGGACTCCATTCTAAAGCATGtgtgaagaaaaaatggtGTTTCACCTGTGAGTTTGAAAGTTTGGTTTTGAAGTCGAAAGAAGGGAAATCTCCACTCTCTCCCATGGGTATACTGTCACAACTACAGAATATTGGGAGTCAACTTGGTAATGGGAGAGAAGAAGATGCACATGAATTTCTAAGGCATGTTATTGACACAATGCAATCAATTTGCCTTATGGAGGCTGGGATTAATGCATCAGGCTCATTGGAAGAGGAAACAACTTTAATGGGTCTAACTTTTGGAGGCTACCTTCGTTCAAAGATAAAATGCATGAAATGTGGGGGGAAGTCTGAGCGTCAGGAGAGGATGATGGATCTAACTGTTGAGATTGAAGGAGAGATAACAACCCTGGAGGAGGCTCTGAGACAGTTTACAAAAACTGAGACTCTAGATGGAGAAAACAAGTACCATTGTGTCAGGTGTAAATCTTACGAGAAGgccaagaagaaaatgacaatttcAGAGGCACCTAACGTTCTTACTGTTGCATTAAAGAGATTTAAGTCTGGAAGATTTGGGAAGCTTAATAAACCCGTTCAGTTTCCTGAAATTCTTGACCTGGCACCTTTTATGAGTGGGACTAGCGACAAATCTCCTATATACAGGCTCTATGGGGCAATTATTCACTTGGATGTCATGAATGCTGCATTTTCGGGTCACTATGTGTGCTACGTGAAAAATTTCCAGAACAAGTGGTTCAAAGTTGATGACAGTGTGGTCACAGCTGTTGAATTGGAGAGAGTCTTGTCAAAAGGAGCTTACATGCTACTCTATGCAAGGTGCTCACCGAGGGCCCCAAGATTAATAAGGAACATGATAGTGTCTTCTGATTCAAGAAGTAAAGCTATGAATGGAAAGACTATTCTTTTGAAATCAAAATGTGTATCTGCAAATTCTGGTGCCGCTGAATATTTCAATGATTCGGTTTCTCCGGATGCTTCGCCCACCTTAGACTCTTTCTATTCTAATTTTCATCGACTGAGAAAGATTTTGTCAGAAGATTCATCAAGCGACAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACTGACAGCACCCGTGATTCAACCAGTACGGATGACTTATCCGATTATATTTTTGGTGATTCAGGACAGGGCTGCTGTGACACTTGTTCATCATCTTCGTCTTCTCCCATGTACTCTAGACATTCACCACTGGCTGATATGGACCGGCATGATTCAGGTTCTACAGATGCAGCTGGGTTGCAAACTCACACAGATCCACACATGGAGATAAATGGTCTTTTGTATAGGCGCGCTACTGGTATCAGCGGAGTGGTGGGAAGGGAGGAAGGTGTTTCTATCAGGCATTCTGACACAAGTATTCTGCAGCATATGAAATTAGATAGTAGTAGACGTAGCGTCAGTAGTTTTAGTGAGACTAACCCTGACCCTGACCCTTTTCAGAGATTAGGATCTAACCATTGTAATGATATAAACTCTGTTCTATCATCGCGGGAAAGAACaggtta 3467 0.4174 MRVTGDIGFSSLVLVVVCLVIPIIGFVIRRKWHHAVARKEEIKRLLILASEEAARAELEASYEHGTVSFPKNNQCAVCYRPTTTRCARCKAVRYCSGKCQIIHWRQGHKEECCPPSTTHRDDDVVRDSGKAAAEQGRLEIHGELSDLGKKPTKQDHFGIQVENSKIEGTHSELSSKKPSSIDISCSSEVSCGKDDNIRVEPLAEGSIADSNSESSCDSFSGFSASNTSSESSDDASVCESIISNEHERSEKHTFVSPTLHMLDTTSGDNSVGITVPSSPKFAALLDSVDGFSTMDNFNQIRSGFIEESKLASNGTSGLRTCKGAMNEHCMVSSSFWDKALDLRGSTGDADGDSLPFDSNKSTGDIKSESGSSLLFSSRKVATLDARDPEAKSSFSDYSSLNPVKNNIPSARSVLQENGCKESSKMRCSSSINSKGSDSDSTSHSDKLDSRSYVHKFSSIREDSGCADASSPRKLQPVESKASNHVLDGPGSTSHLLKSVEVIRVPHAFADAQLDSRTEEQTHSNARFVNNGVQSSTTASSQVASCSPNSKNGLKTSVLKVVDQFRGSNLSKRSPLAVGSNIAGRYSDKGLFPYDLFVKLFNSNKVELRPFGLINCGNSCYANAVLQCLAFSPPLTAYLLQGLHSKACVKKKWCFTCEFESLVLKSKEGKSPLSPMGILSQLQNIGSQLGNGREEDAHEFLRHVIDTMQSICLMEAGINASGSLEEETTLMGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEITTLEEALRQFTKTETLDGENKYHCVRCKSYEKAKKKMTISEAPNVLTVALKRFKSGRFGKLNKPVQFPEILDLAPFMSGTSDKSPIYRLYGAIIHLDVMNAAFSGHYVCYVKNFQNKWFKVDDSVVTAVELERVLSKGAYMLLYARCSPRAPRLIRNMIVSSDSRSKAMNGKTILLKSKCVSANSGAAEYFNDSVSPDASPTLDSFYSNFHRLRKILSEDSSSDNSSLISSNSDEGSCSTDSTRDSTSTDDLSDYIFGDSGQGCCDTCSSSSSSPMYSRHSPLADMDRHDSGSTDAAGLQTHTDPHMEINGLLYRRATGISGVVGREEGVSIRHSDTSILQHMKLDSSRRSVSSFSETNPDPDPFQRLGSNHCNDINSVLSSRERTG 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02284 1155 MobiDBLite consensus disorder prediction 347 369 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 415 449 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 989 1020 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 1113 1143 - -
Bva12g02284 1155 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 610 915 IPR028889 -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 355 369 - -
Bva12g02284 1155 Gene3D Cysteine proteinases 602 926 - -
Bva12g02284 1155 ProSiteProfiles Zinc finger MYND-type profile. 75 112 IPR002893 -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 462 491 - -
Bva12g02284 1155 SUPERFAMILY Cysteine proteinases 606 918 IPR038765 -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 415 438 - -
Bva12g02284 1155 Pfam MYND finger 75 112 IPR002893 -
Bva12g02284 1155 Coils Coil 39 59 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 1039 1070 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 164 184 - -
Bva12g02284 1155 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 611 626 IPR018200 GO:0004843|GO:0006511
Bva12g02284 1155 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1125 - -
Bva12g02284 1155 SUPERFAMILY HIT/MYND zinc finger-like 71 114 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 207 237 - -
Bva12g02284 1155 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1125 - -
Bva12g02284 1155 Pfam Ubiquitin carboxyl-terminal hydrolase 610 912 IPR001394 GO:0004843|GO:0016579
Bva12g02284 1155 Gene3D - 63 115 - -
Bva12g02284 1155 MobiDBLite consensus disorder prediction 204 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02284 Bva-Chr12 17401994 17407676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02284 542 919 Miscellaneous Gene Families AT4G31670 47.938 6.17e-125 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02284 K11855 - gmx:100795674 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02284 12 17401994 17407676 Bva12g02284 12 17401994 17407676 ECH