LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02276	ATGGCTTCAATTTCAGGCATTTGTTCATCTTCTCCAACTCTGAAGCTACAAAAGCAAATTCCAAGACTTTCTAACCCTCTAGGCAAAGAATTGGTGGCATTTCCCACTCGTCGCAAATTTCCCATTGATCGGAGTTTGAGTCTCGTGTCAACTCAGTCCGTGGCTCGGGAAATCCCAGCGAAATTGGCAACCTCGAAAGATGGAACTATCGTAAAGGAGAAGAGGGGTTTGGAGAAAGATCCCGGTTGTCTGTGGAGGAGATACAATGACTGGCTCTACCAGCACAAGGAGCTGGGACTTTATCTTGATGTTAGTCGCGTGGGTTTCACTGACGAGTTCGTGCAGCAGATGGAGCCCAGGTTCCAAGAAGCGTTTAGAACGATGGAGGAGCTGGAGAAGGGTGCCATTGCGAATCCCGATGAGGGTCGCATGGTCGGCCATTATTGGTTGAGGGACGCTAACCGCGCTCCGAATCCCTTCCTGAAGACGCAGATTGAGAATACTCTCGAGGCCGTGTGCAAGTTCGCTGATGATGTCGTCAGCGGTAAGATTAAGCCTCCATCCTCTCCAGAGGGACGCTTTACTCAAATACTCTCTGTTGGAATTGGAGGTTCAGCTCTTGGACCACAGTTCGTGGCAGAGGCATTGGCTCCTGATAATCCTCCTCTTAAGATAAGATTTATTGACAACACAGATCCCGCTGGAATTGATCATCAGATTGCACAACTTGGCCCAGAGCTTGCTTCAACCCTAGTAATAGTAATTTCAAAGAGTGGAGGTACCCCAGAAACTAGGAATGGTTTATTAGAAGTACAGAAGGCCTTCCGTGAAGCAGGCTTGAATTTTCCGAAACAGGGTGTTGctataacacaagaaaattcTTTGTTAGATAACACTGCAAGAATTGAGGGCTGGTTGGCTAGATTTCCCATGTTTGACTGGGTCGGAGGTAGAACATCAGAGATGTCTGCAGTTGGCCTGCTTCCTGCTGCCCTTCAGGGGATTGACATTAGAGAAATGCTAGTTGGTGCAAAATTGATGGACGAGGCGAATAGAGTTACTGCAGTAAGGAATAACCCTGCAGCTTTGCTTGCTTTATGTTGGTATTGGGCTACTGATGGTATTGGATCTAAGGATATGGTTATCCTTCCATATAAGGACAGCCTGTTATTATTTAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTAGACGGTAATCGGGTTAATCAAGGAATTTCTGTGTATGGAAATAAAGGGAGCACCGACCAGCATGCTTACATTCAGCAACTAAGGGAAGGCGTCCACAATTTCGTTGTAACTTTCATTGAGGTTCTACGTGATAGGCCCCCTGGTCATGATTGGGAGCTTGAACCTGGTGTGACATGTGGTGACTACCTGTTTGGTATGCTACAGGGAACAAGGTCAGCTCTGTATGCTAATAACCGGGAGTCCATCACAGTCACAGTGCAAGAGGTGACACCCAGATCAGTTGGTGCTCTTATTGCACTTTATGAACGAGCAGTTGGCATATATGCCTCACTAGTTAACATAAATGCTTATCACCAACCCGGCGTGGAAGCTGGTAAAAAAGCAGCAGGTGAAGTATTAGCACTTCAGAAACGAGTCTTGGCGGTGCTAAATGACGCAAGCTGCAAAGATCCTCTTGAACCGTTAACGCTTGAAGAAGTAGCAGATCGTTGTCACGCTCCAGAAGATATTGAAATGATTTACAAGATTATTGTTCACATGGCTGCCAACGACAGAGCGCTTATTGCTGAAGGCAGCTGCGGTTCGCCACGGAGCATGAAGATTTTCCTTGGGGAGTGTAATGTTGATGATTTGTACGCTTG	1871	0.4629	MASISGICSSSPTLKLQKQIPRLSNPLGKELVAFPTRRKFPIDRSLSLVSTQSVAREIPAKLATSKDGTIVKEKRGLEKDPGCLWRRYNDWLYQHKELGLYLDVSRVGFTDEFVQQMEPRFQEAFRTMEELEKGAIANPDEGRMVGHYWLRDANRAPNPFLKTQIENTLEAVCKFADDVVSGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLNFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLVGAKLMDEANRVTAVRNNPAALLALCWYWATDGIGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFVVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANNRESITVTVQEVTPRSVGALIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNDASCKDPLEPLTLEEVADRCHAPEDIEMIYKIIVHMAANDRALIAEGSCGSPRSMKIFLGECNVDDLYA	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02276	623	ProSitePatterns	Phosphoglucose isomerase signature 2.	519	536	IPR018189	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	1	623	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	Hamap	Glucose-6-phosphate isomerase [pgi].	97	546	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	CDD	SIS_PGI_2	378	542	IPR035482	-
	Bva12g02276	623	Gene3D	-	333	528	-	-
	Bva12g02276	623	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	1	623	-	-
	Bva12g02276	623	Gene3D	-	148	332	-	-
	Bva12g02276	623	Pfam	Phosphoglucose isomerase	127	453	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	Pfam	Phosphoglucose isomerase	484	544	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PRINTS	Glucose-6-phosphate isomerase signature	385	406	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PRINTS	Glucose-6-phosphate isomerase signature	519	532	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PRINTS	Glucose-6-phosphate isomerase signature	197	216	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PRINTS	Glucose-6-phosphate isomerase signature	487	505	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PRINTS	Glucose-6-phosphate isomerase signature	505	519	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	PRINTS	Glucose-6-phosphate isomerase signature	309	327	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Bva12g02276	623	CDD	SIS_PGI_1	166	332	IPR035476	-
	Bva12g02276	623	SUPERFAMILY	SIS domain	85	546	IPR046348	GO:0097367\|GO:1901135
	Bva12g02276	623	ProSiteProfiles	Glucose-6-phosphate isomerase family profile.	77	552	IPR001672	GO:0004347\|GO:0006094\|GO:0006096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02276	Bva-Chr12	17354602	17359826	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02276	K01810		-	gmx:100791285	1092.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva12g02276	12	17354602	17359826	Bva12g02276	12	17354602	17359826	ECH