Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02274 ATGCGACTTCATACCAATGTAAGGAATATTAGAAGGTTCTTACAAATTGGTTATCAGGAAAGGGCTCTATGTAGAACTAAATTATCAGGTTTCATGAAATCTTCTAAAACTTTTAGTAGCGGGCCCAAGCATGTTCCTTCTAGTTTGTCATCACAATCATCATTTTCACTCCCATGGATCTCTCCCCTTCAGTTTACAAAAGTTGTGGCCCCCAGGCCTGATCCACCTGCTGAAACAAATGACAATCCTACAGAATCTCGACGGAAAAACAAGTTTGTCTCCCATGCGTCTGTCATAAACTTAATCAAACGTGAAAAAGATCCACAGCATGCCTGGAAGATATTTAATATGGCATCAGAGCAAAAGGGATTCAATCACAATAATGCTACATACGCAGCAATTCTTCAAAAGTTTGCTCAGTGCAAGAAGTTTCAGGCCATTGATCGAGTTCTGCATCAAATGAACTATGAAACTTGCAAATTTCATGAGGGTATATTTATTAACCTCATGAagcatttttcaaagtcctctATGCATGAAAAAGTGCTTCAGATGTATTACACCATCCAGCCAGTTGTTCGTGAAAAGCCCTCTCCCAAAGCCATTAGTACTTGTCTCAATCTTCTGCTCGAATCAAACCAGGTTGATTTGGCCCGACAGTTGCTCCTGCATGCCAAGAGTTGTTTAAACAATAAGCCAAATACCtgcatatttaatattttagtgaaATACCACTGCAAAAATGGGGATCTTGACTCCGCTTTTGAAGTTGTTAAGCAAATGAAGTACTCCAAGTCGTCTTACCCCAATTTACTTACGTACTCAACCCTGATGCATGGCCTCTGTCAAAATGGGAGACTCAAAGAAGCTTTTGAACTTTTTGAGGAAATGTTGTCAAAGGATGATATCTTACCTGACCCGGTGATTTACAATGTCTTGATCGACGGATTCTGCCGTGGAGGGAGAACCGGTCGTGCTAGacatataattgaatttatgaGAAACAATGGATGCAatccaaatttatataattactcAACCCTGATGAATGGCTTTTGTAAAGAGGGGAAACTGCACGAGGCAAAGGAGGTATTTTCCGAGatgaagagatttggtctaaagCCTGATACAGTTTGCTACACTACTTTGATCAATTTCCTTTGTAGGGCTGGGCAAATAGACGAAGCTGAAGAGTTGCTTGAAGAAATGGAGGAGAATGAATGCAAAGCTGATACTGTAACCTACAATGTGATGCTTGGAGGCCTATGCAGAGAAAGTAGGTTTGAGAAAGCTCTTGAGATGCTCGAGAGACTTCCACGAGAAGGTGTCTACCCGAACAAAGCTAGTTATAGGATTGTGCTAAATTCGATGACCCAAAATTGTGAGTTGAAAAAGGCAATGAAATTGTTAGGGATGATGCTAGGTAGGGGTTTTTTACCCCATTACGCTACTTCAAATGAGTTGCTGGTTAATCTTTGTAAGGCTGGAATGGCCGATGATGCTGCTATGGCACTGTTTGGATTATTGGAGATGGGCCTCCAACCAAGTCCTGATTCTTGGGGACTTctgattgaattaatttgcAGAGGCAGAAAGTTGTTGTATGTATTTGAGCTTTTTGATGAGTTAGTAATAACAGAGTCCTG 1646 0.3858 MKYSKSSYPNLLTYSTLMHGLCQNGRLKEAFELFEEMLSKDDILPDPVIYNVLIDGFCRGGRTGRARHIIEFMRNNGCNPNLYNYSTLMNGFCKEGKLHEAKEVFSEMKRFGLKPDTVCYTTLINFLCRAGQIDEAEELLEEMEENECKADTVTYNVMLGGLCRESRFEKALEMLERLPREGVYPNKASYRIVLNSMTQNCELKKAMKLLGMMLGRGFLPHYATSNELLVNLCKAGMADDAAMALFGLLEMGLQPSPDSWGLLIELICRGRKLLYVFELFDELVITES 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02274 288 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 80 IPR002885 -
Bva12g02274 288 Gene3D Tetratricopeptide repeat domain 72 146 IPR011990 GO:0005515
Bva12g02274 288 Gene3D Tetratricopeptide repeat domain 1 71 IPR011990 GO:0005515
Bva12g02274 288 SUPERFAMILY HCP-like 21 188 - -
Bva12g02274 288 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 1 286 - -
Bva12g02274 288 Gene3D Tetratricopeptide repeat domain 147 240 IPR011990 GO:0005515
Bva12g02274 288 Pfam PPR repeat 9 37 IPR002885 -
Bva12g02274 288 Pfam PPR repeat 42 74 IPR002885 -
Bva12g02274 288 Pfam PPR repeat 76 109 IPR002885 -
Bva12g02274 288 Pfam PPR repeat family 115 164 IPR002885 -
Bva12g02274 288 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 10 44 IPR002885 -
Bva12g02274 288 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 286 - -
Bva12g02274 288 Pfam PPR repeat 189 218 IPR002885 -
Bva12g02274 288 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Bva12g02274 288 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Bva12g02274 288 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Bva12g02274 288 TIGRFAM PPR: pentatricopeptide repeat domain 85 117 IPR002885 -
Bva12g02274 288 TIGRFAM PPR: pentatricopeptide repeat domain 189 220 IPR002885 -
Bva12g02274 288 TIGRFAM PPR: pentatricopeptide repeat domain 153 186 IPR002885 -
Bva12g02274 288 TIGRFAM PPR: pentatricopeptide repeat domain 48 81 IPR002885 -
Bva12g02274 288 TIGRFAM PPR: pentatricopeptide repeat domain 13 46 IPR002885 -
Bva12g02274 288 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Bva12g02274 288 Coils Coil 129 149 - -
Bva12g02274 288 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02274 9 284 Glycosyltransferase AT1G05670 26.449 3.23e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02274 - - mtr:MTR_3g100600 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02274 12 17347556 17350510 Bva12g02274 12 17347556 17350510 ECH