Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02269 ATGGAGTCGATTCCTTTTCACGATGGCAACTTACACAACTTGCTTGAGAGCCGATACCTCGACAGTCGACTAGATATCAATCACAGTTTGCCGATGCACTCCTCATTGATTAGAAGGCTTTCTCAAGAAAGAGAATTAGAGGGTCATAATGGTTGTGTTAATGCTGTGGCTTGGAATTCCAAAGGTTCACTATTGATATCTGGGTCAGATGATACCCGGATCAATATTTGGAACTATTCTGATTGGAAACTTTTACATTCAATTGACACCGGACATTCAGCAAATATATTCTGTACTAAGTTCGTACCTGAAACTTCTGATGAGCTTGTGGTCTCTGGAGCTGGAGATGCTGAAGTTCGActatttaatttgtctcactTAAGTGGGAGTGGATTTAATGATAATGCTATTACTCCATCAGCGCTTTATCAATGTCACACTAGAAGAGTCAAGAAATTGGCCGTTGAAATTGGGAATCCCAATGTGGTGTGGAGTGCTAGTGAAGATGGAACCCTGCGACAGCATGACTTTCGAGAAGGCACCTCTTGTCCTCCAGCAGGATCTTCACACCAAGAGTGTCGGAATGTTCTGCTTGACTTGCGGAATGGAGCTAAAAGGTCACTTGCTGATCCTCCAAAACAAGTTCTTGCTCTAAAATCTTGTGATATTAGCTCTACCAGGCCACATTTGCTCCTTGTTGGCGGGAGTGATGCCTTTGCGCGGTTATATGATAGGAGGATGCTGCCTCCTCTGAGCTCCTGTCAGAAAAGAATGTCACCACCTCGTTGTGTTAATTATTTCTGCCCGATGCATCTCTCTGATCGTGGACATCCAAGTTTGCACTTAACACATGTTACATTCAGTCCTGATGGAGATGAGGTTCTACTTAGCTATAGTGGCGAGCATGTTTACCTGATGAATGTGAATCATGCTGGGGAGAATGCAATGCAATATACTTCTGGAGATGTCTTGAGACTAATGAATTACTCCCCACAAGTTAATGGGGTAGAAGTGCAGCCTCCTGTGTCCAGTTCCCTCCCAAATGGTTTTTCTAATAGAAGAAATGTTGCAATGAAGCTTGACAAGTGCAGggatttaattcaatttgccAAAAAATGCTTGGACGAGGGGAGATACTATAGTGGAATTGAGGCATGTAACGAAGTGTTGCATGGTTGTGGTCGTTATGTGGGTCCTGTGCTAAAACACGAATGTCTATGTACCCGTGCTGCACTATTGCTTAAGCGGAAGTGGAAAAACGACACTCATATGGCCATAAGAGACTGCTATAATGCTAGGCGAATTGATAATACCTCTTACAGAACACTTTATTATATGTCAGAAGCATTATCACAGTTGGGTAAACATAATGAAGCTTTGGATTTTGCTGTTGCTGCTCACTCGTTGGCCCCATCGATATCTGAAGTCGCAGAAAAGGTGGAGAATGCAAAGAACGATATTGCTTCAGCTGAagctgaaaaaaataagacaagtGATGGAGCTTCAAGGTTTGAGAGTCGAGGGGGAAGAATATTATCATTGAGTGACATACTTTACCGCACAGAGGCTAATAGTGATGCTTCACAAGATGGTCCAAGGTCTGACAGGGATGATTCTGATTATGATGAGGAATTAGAGTTGGACTTTGAAACATCAGTATCAGGTGATGAGGGACGTGATTCTGACTCCAATACTCTTCATGGGAGTTTAAATCTGAGAATCCATAGAAGAGGTGACTCCAGAGAAAATGCTGGTGCAAATGGCTTGTGTGAATCGCTCTCATCATCATCACAGAATGATAGAGCACCATATCAGCCTGAAGCAGCTATTGATATGGAGTTCAGATACGTTGGCCACTGTAATGCTGGAACCGATATAAAACAAGCCAGCTTTCTTGGTCAAAGAGGTGAATATGTTGCTAGTGGAAGTGATGATGGGAGATGGTTTGTTTGGGAAAAGCGGACTGGGCGAATCATAAAAATGCTCAATGGTGATGAAACGGTTGTAAATTGTGTTCAGTGCCATCCATTTGATTGTGTTGTAGCAACCAGCGGTATTGATAATACTATAAAGATGTGGACTCCAAGTGCTTCTGTTCCATCTATTGTGGCTGGTGGATCTGCAGGACCAGAAGCTGCAGATGTGTTGATTGCCATGGAGAACAATCAACGTAAATTATGCCGTAATCGTGATTCTATCTTGCCTTTTGAGCTTTTGGAGCCATTCAGAATGCACGAGTTTCCTGAAGGATCATTGCGTTTGCGTCCATTTGAATGCGCCCAAAGTTA 2288 0.4205 MESIPFHDGNLHNLLESRYLDSRLDINHSLPMHSSLIRRLSQERELEGHNGCVNAVAWNSKGSLLISGSDDTRINIWNYSDWKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSHLSGSGFNDNAITPSALYQCHTRRVKKLAVEIGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNVLLDLRNGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCQKRMSPPRCVNYFCPMHLSDRGHPSLHLTHVTFSPDGDEVLLSYSGEHVYLMNVNHAGENAMQYTSGDVLRLMNYSPQVNGVEVQPPVSSSLPNGFSNRRNVAMKLDKCRDLIQFAKKCLDEGRYYSGIEACNEVLHGCGRYVGPVLKHECLCTRAALLLKRKWKNDTHMAIRDCYNARRIDNTSYRTLYYMSEALSQLGKHNEALDFAVAAHSLAPSISEVAEKVENAKNDIASAEAEKNKTSDGASRFESRGGRILSLSDILYRTEANSDASQDGPRSDRDDSDYDEELELDFETSVSGDEGRDSDSNTLHGSLNLRIHRRGDSRENAGANGLCESLSSSSQNDRAPYQPEAAIDMEFRYVGHCNAGTDIKQASFLGQRGEYVASGSDDGRWFVWEKRTGRIIKMLNGDETVVNCVQCHPFDCVVATSGIDNTIKMWTPSASVPSIVAGGSAGPEAADVLIAMENNQRKLCRNRDSILPFELLEPFRMHEFPEGSLRLRPFECAQS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02269 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Bva12g02269 762 Pfam WD domain, G-beta repeat 663 693 IPR001680 GO:0005515
Bva12g02269 762 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Bva12g02269 762 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 23 761 - -
Bva12g02269 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 693 IPR001680 GO:0005515
Bva12g02269 762 Gene3D - 612 710 IPR015943 GO:0005515
Bva12g02269 762 MobiDBLite consensus disorder prediction 587 602 - -
Bva12g02269 762 MobiDBLite consensus disorder prediction 549 602 - -
Bva12g02269 762 Gene3D - 33 344 IPR015943 GO:0005515
Bva12g02269 762 Coils Coil 473 500 - -
Bva12g02269 762 SUPERFAMILY WD40 repeat-like 39 693 IPR036322 GO:0005515
Bva12g02269 762 SUPERFAMILY TPR-like 359 477 IPR011990 GO:0005515
Bva12g02269 762 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 23 761 IPR045151 -
Bva12g02269 762 Gene3D Tetratricopeptide repeat domain 353 506 IPR011990 GO:0005515
Bva12g02269 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Bva12g02269 762 SMART WD40_4 136 176 IPR001680 GO:0005515
Bva12g02269 762 SMART WD40_4 655 694 IPR001680 GO:0005515
Bva12g02269 762 SMART WD40_4 609 652 IPR001680 GO:0005515
Bva12g02269 762 SMART WD40_4 39 78 IPR001680 GO:0005515
Bva12g02269 762 SMART WD40_4 211 244 IPR001680 GO:0005515
Bva12g02269 762 SMART WD40_4 81 123 IPR001680 GO:0005515
Bva12g02269 762 SMART WD40_4 265 307 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02269 Bva-Chr12 17306110 17315172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02269 636 746 Miscellaneous Gene Families AT5G08390 26.549 8.22e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02269 K11807 - gmx:100793917 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02269 12 17306110 17315172 Bva12g02269 12 17306110 17315172 ECH