Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02257 ATGGCGAACCGCTTCTTTTTGGTCGGTCTGAGACGTATCAATTTTCTGCTGGGTGCATCAAGTTTACGGAGACTCGTATCTTCTCGAGCTTCTCCGTTCAATGCAATGGAGGAGCCACCGGTGCAGAAAGAAATCATGAGAATGAAATCCTCCATTGAAAACCCAATACCTGTGCTTCAATGCTGGGTCGAACAAGGCAACAGGTTGTCAAAGTCCGAACTCAGACGCATCATCAAGACgctcatcaaatcaaagcGTTTCCATCATGCACTTGAGATATTCACATGGATGGAAAACCAGAAAAATGTTGGCATGTCACCGATTGATCATTCTGTAAAACTAGAACTAATCATTAAAATCTATGGTCTAGCAGAGGCTGAAGAATACTTCACGTGTATACCCAACTTGGCTTCGCGGAAAGCTGCCTGTCTCCCTCTTCTACGGGGATATGTAAGAGATAGAGACACTTGTAAAGCTGAGGCTTTAATGGTAAAGCTCTATGAGTTGGGACTAGTCGTCAGCCCTCACCCCTATAATGAGATGATGAAACTGTATTTGGCCTCGCGTGACTACATCAAAGTGCCCCTTGTTATCCATGAAATGAAGCGAAATAGAATACTCCTCAATGTTCTCTCGTACAACCTTTGGATGAATGCTTATGGTGATGGTGAAGGATCTGGGGTTGCATCAGCAGAAATGGTTTTCAGAGAAATGCAAAATGATCACAATGTTGAAGTAGGATGGAGCAGTCTTGCTactttagttaatatttatattaaagcaGGGCAATCTGACAAAGCTGTCCTGGTTCTCAACACTGCAGAAAAGAAACTATCTACCCGTAACCGCCTGGGTTACTTCTTCCTGATGACCCTATATGCATCTTTGAAGGATGAGGAAGGAGTCTTGCGGCTATGGGAAGATAGCAAAGATGTTCCTGGAAGAATGACCTGTGCCAACTACATGTGTGTTCTGTCATGCTTGGTGAAGATTGGAGACCTCGTACTAGCTGAGCGAATTTTCATCGAATGGGAGTCTAATTGTAGGAAGTATGATGTCAGAGTCTCCAATGTTCTTCTGGGTGCATACATGCGGAATGGATTGACAGAAAAAGCTGAATGGTTACATCTTCATACATTGGAGAAGGGTGGATGcccaaattataaaacatgGGAGATTTTGATGGAAGGATTTGTCAAGAGCCAAAAGATGGACAAAGCCATTGTTGCCATGAAGGGAGCTTTTGGTATGTTGAATAAGTGTGATTGGAGGCCCCCGCATGCACTTGTGATGGTTATAGCAGAGCATTTTGAGAAACTTGGAAATTTGGAAGATTTAAACGAGTATGTAAAAGATATCCACAAGTATGGTCTTGCAACGTTAtcattgtataaaatattgcTAAGAATGCACGTTTTTGCTGACAAACCAGCTTGTCATGTCCTTGAAATGATGGACAAAGATAACATTCAGGTGGATGATGAGACCCTTCCCATTATTGAAGTTTTAAAAGGGTG 1517 0.4094 MANRFFLVGLRRINFLLGASSLRRLVSSRASPFNAMEEPPVQKEIMRMKSSIENPIPVLQCWVEQGNRLSKSELRRIIKTLIKSKRFHHALEIFTWMENQKNVGMSPIDHSVKLELIIKIYGLAEAEEYFTCIPNLASRKAACLPLLRGYVRDRDTCKAEALMVKLYELGLVVSPHPYNEMMKLYLASRDYIKVPLVIHEMKRNRILLNVLSYNLWMNAYGDGEGSGVASAEMVFREMQNDHNVEVGWSSLATLVNIYIKAGQSDKAVLVLNTAEKKLSTRNRLGYFFLMTLYASLKDEEGVLRLWEDSKDVPGRMTCANYMCVLSCLVKIGDLVLAERIFIEWESNCRKYDVRVSNVLLGAYMRNGLTEKAEWLHLHTLEKGGCPNYKTWEILMEGFVKSQKMDKAIVAMKGAFGMLNKCDWRPPHALVMVIAEHFEKLGNLEDLNEYVKDIHKYGLATLSLYKILLRMHVFADKPACHVLEMMDKDNIQVDDETLPIIEVLKG 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02257 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Bva12g02257 505 Pfam Pentatricopeptide repeat domain 170 222 IPR002885 -
Bva12g02257 505 PANTHER OS02G0796400 PROTEIN 33 502 - -
Bva12g02257 505 Pfam PPR repeat 357 377 IPR002885 -
Bva12g02257 505 Gene3D Tetratricopeptide repeat domain 249 448 IPR011990 GO:0005515
Bva12g02257 505 PANTHER OS12G0527900 PROTEIN 33 502 - -
Bva12g02257 505 Gene3D Tetratricopeptide repeat domain 41 225 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02257 Bva-Chr12 17248612 17250943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02257 41 425 EF-hand Containing Proteins AT1G02150 35.233 3.67e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02257 - - gmx:100803685 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02257 12 17248612 17250943 Bva12g02257 12 17248612 17250943 ECH