Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02252 ATGCGAAGGAAGCATGGTCACTTGAGAAGAGGAGTGTCCCTGCATGGCTTGTGCTGCTCTCTTTTACCTCTCTGGCTCATGAACGATGTGTCAGATCAATCTGCCTTGGAATCCCACTTCCACCAGAGTACCACAACGAATTCAGCAAATGGTGGTTGTTATCTTAAGTTTTGCGCCCCAAACCCTGCTACTGCTGGATCCGCTGCACCAAAGATGCAGCTTAGCGTAAAAGACTTGGTTGAATCCAATTGTCTGAGCTGTGTTCCTTCCGAATATGTGTGCCTCAAAACTCATGAGGATTCCATGCTCTCTGAAACGGAAACTATTCCTACCATTGACTTTTCCCAGCTTACGTCTCCCAATCCCAATCAACGCTCCAAAGCCAGTCTACAACTTGCACATGCCTGTCGCCACTGGGGATTCTTCATGTTGACAAACCATGGGGTGTCGGAGACTTTAAGGGACGAGGTCATTAGAGCAGCTCATGATTTTTATGATCTAGCTGAGGAGGAAAAACGAAAATACGCGGGAGGCCAACTGTTTGATCCTATCAAATATGGAACAAGCTTCAACCCCAGAGTCGACAAGAATCTTTTCTGGAGAGATTATCTCAAAATCCATGTTCATCCTCAATTTCATGCTCCCACTAAGCCCCCTGCTTTCAGTGAAATCTTGGAAGAATACTGCAAGAAAAGCAGGGAAGTGATCGGGAAGTTACTCAAGGGAATATCGAAGAGTTTGGGCCTAGAAGAAAGCTACATACATAAGAGGCTCAACTTAGAATCGGGCTCCCAATTGgttgtgataaatttttatccacCTTGTCCAAAGCCTGAGGTTACAATGGGCTTGCCTCCCCACACAGATTATGGGCTTTTGACCCTTCTGGTGCAAAATGAGCTTAATGGGCTTCAAGTCCAATATAATGGAAAGTGGGTTCCGGTCCATCCCTTACCCAACTGCATTCTTGTCAACACGGGAGATCATATGGAGATATTGACAAATGGGAAATACAAGAGCGTTGTGCACAGAGCAGTGGTGAACAAGAAAGCAGTAAGAATTTCCATTGGAACGGCACACGGGCCACCACTTGACACCGTTCTCAGTCCTGCGCCGGAGCTGCTTTCCGACGATAACCCTCCGGCATATCGTGCAATTACATATAGGAAATACGTCCAGCTTCAGAAAAACCATCCACTCGACAGAAAATCTTGCTTGGATCGTATACGTCTTTG 1235 0.4567 MRRKHGHLRRGVSLHGLCCSLLPLWLMNDVSDQSALESHFHQSTTTNSANGGCYLKFCAPNPATAGSAAPKMQLSVKDLVESNCLSCVPSEYVCLKTHEDSMLSETETIPTIDFSQLTSPNPNQRSKASLQLAHACRHWGFFMLTNHGVSETLRDEVIRAAHDFYDLAEEEKRKYAGGQLFDPIKYGTSFNPRVDKNLFWRDYLKIHVHPQFHAPTKPPAFSEILEEYCKKSREVIGKLLKGISKSLGLEESYIHKRLNLESGSQLVVINFYPPCPKPEVTMGLPPHTDYGLLTLLVQNELNGLQVQYNGKWVPVHPLPNCILVNTGDHMEILTNGKYKSVVHRAVVNKKAVRISIGTAHGPPLDTVLSPAPELLSDDNPPAYRAITYRKYVQLQKNHPLDRKSCLDRIRL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02252 411 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 70 409 - -
Bva12g02252 411 Pfam 2OG-Fe(II) oxygenase superfamily 265 357 IPR044861 -
Bva12g02252 411 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 263 362 IPR005123 -
Bva12g02252 411 Gene3D - 72 399 IPR027443 -
Bva12g02252 411 Pfam non-haem dioxygenase in morphine synthesis N-terminal 109 213 IPR026992 -
Bva12g02252 411 PANTHER - 70 409 - -
Bva12g02252 411 SUPERFAMILY Clavaminate synthase-like 75 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02252 Bva-Chr12 17227110 17230677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02252 109 411 Glycosyltransferase AT5G59530 31.935 2.33e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02252 - - gmx:100798911 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02252 12 17227110 17230677 Bva12g02252 12 17227110 17230677 ECH