Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02242 ATGATGCTCCACCAGCCATTTCTCTGCGGGTCCAGAGCTACTACTCAGTACACGCTGTATCCGTCAGTCTTTTCTAGTAATAACAACACTGGGCGTAGTTCATTTCCTGCAAATTCTTCTGGACATGAAATGGGgTTGAAGTTAAGCAAGCAAGTATCGGGAAACGATGAGCGTGGAAGTTTCAGTAATACAAGGGACCATTCCAAGCATGGGGCAAGTAATGTTTATAGTCATCGTGCTCAAGAACGTGTACTTGAGGAAGAAGCGACCCAGGCATTAGAAGACAGACTACCCCGGAAAATCTTTCCAGGACAGGCATTTCCACTGGGCGTATCAGAAGTTGACAATGGGATaaattttgctattttttctCAGCATGCAACCGCTGTTACACTGTGTTTAGTCCTTCCCGAAAGaggAAACATTGGCGCACTGGACAGTGGCATGATAGAGCTGGCTTTGGATCCCCGTTTGAACAAAACAGGGGACATTTGGCACATATGTATTGAGGATTTGCCTCGGAGCAATGTTCTCTATGGTTATCGCATTAATGGTCCTCAAGACTGGGGTAAGGGGCATAGATTTGATAAAAGCATGGTGCTTATTGATCCTTATGCAAAGCTGATTGAAGGTCGACGATATTTTGGGGATACCAGCATGAAGTTTTCTAAGTTTCTTGGCACCTACAATTTTGATAGCTTGCCTTTTGACTGGGGAGAAAACTACAAGCTTCCAAATATTCCTGAGAAAAATCTTGttatatatgaaatgaatGTTCGTGCATTTACGATTGATGAATCTAGTGGGTTGGATCATGACGTTTGTGGAAGCTATCTTGGTGTTATTGAGAAGATCCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCCATCTTTGAGTTTGATGAGTTGGAGTTCCAGAGGCGTCCAAACCCAAGAGATCATATGATTAATACGTGGGGTTATTCgacaataaatttctttgctCCCATGAGTCGCTATGCTAGTTCTGGTGGAGGTCCAGTTAGTGCTTCCAGGGAGTTCAAGCAAATGGTTAAAGCCTTACATTGTGCTGGCATAGAGGTTATTTTGGATGTTGTTTACAATCATACTAACGAGGCTGATGATGAACACCCATATACCACTTCGTTTCGCGGCATAGATAATAAGGTTTATTACATGTTGGACAAAAATGGTCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAACTGTAACCACCCTGTGGTTATGGAACTCATTCTTGACAGCCTAAGACACTGGGTCACCGAATATCATGTGGATGGATTTCGATTTGACCTAGCAAGTGTCCTTTGTCGAGGAAGTGATGGTTCCCCACTTAGTGCTCCCCCAGTTATCaggGCAATTGCCAAAGATGCGGTTCTATCaagatgtaaaattatttcgGAACCTTGGGATTGTGGAGGTCTTTACCTTGTTGGAAGATTTCCTAATTGGGACcgGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTGCGGAGATTCATCAAGGGTGACACTGGGATGAAGGGGAGCTTTGCAACTCGTGTTGCTGGATCTTCTGATCTTTACAGAGTGAACAAGCGCAAACCTTATCATAGTATAAACTTTGTTATTGCACATGACGGGTTCACCTTGCATGATCTTGCTTCATACAATTTCAAGCACAATGAAGCCAATGGTGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGCTGGAATTGTGGTTTTGAAGGGGAAACTAATGATGCCAGTATAAGAGCTTTACGATCACGGCAAATGAAAAACTTCCATTTGGCGTTGATGATATCTCAGGGAGTACCAATGATGCTGATGGGAGATGAGTATGGCCATACTCGCTTTGGGAATAACAATAGTTATGGGCATGATACTGCTATTAATCATTTCCTCTGGGATCAGTTGGATGCAAGGAAGAGCGAtcatttcatgtttttttcGAATGTGATAAAATTCCGGTCTGCACGTAATGTATTCAGCCATGAAAACTTTCTTGGCAAAAATGATGTGACGTGGCATGAGGACAATTGGGACAATTATGAAAGCAAATTTCTCGCATTCACGCTCCATGACAGAAATGGTGGTGACATCTACTTGGCCTTTAATGCTCATGACTATCTTGTTGAAGTTTCGTTGCCCACACCTCCAGCTAAGAGGAGTTGGTATCGTGTGGCAGACACTAATCTCAAATCTCCCGACGACTTTGTCCCTAATGGCGTCTCTGGGATAGGAAAGACCTACAATATAGCTCCATACTCCTCCATTCTTCTTGAAGCCAACTCCTA 2342 0.4189 MMLHQPFLCGSRATTQYTLYPSVFSSNNNTGRSSFPANSSGHEMGLKLSKQVSGNDERGSFSNTRDHSKHGASNVYSHRAQERVLEEEATQALEDRLPRKIFPGQAFPLGVSEVDNGINFAIFSQHATAVTLCLVLPERGNIGALDSGMIELALDPRLNKTGDIWHICIEDLPRSNVLYGYRINGPQDWGKGHRFDKSMVLIDPYAKLIEGRRYFGDTSMKFSKFLGTYNFDSLPFDWGENYKLPNIPEKNLVIYEMNVRAFTIDESSGLDHDVCGSYLGVIEKIPHLLELGINAVELLPIFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASSGGGPVSASREFKQMVKALHCAGIEVILDVVYNHTNEADDEHPYTTSFRGIDNKVYYMLDKNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGSDGSPLSAPPVIRAIAKDAVLSRCKIISEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDVRRFIKGDTGMKGSFATRVAGSSDLYRVNKRKPYHSINFVIAHDGFTLHDLASYNFKHNEANGEGGNDGSNDNFSWNCGFEGETNDASIRALRSRQMKNFHLALMISQGVPMMLMGDEYGHTRFGNNNSYGHDTAINHFLWDQLDARKSDHFMFFSNVIKFRSARNVFSHENFLGKNDVTWHEDNWDNYESKFLAFTLHDRNGGDIYLAFNAHDYLVEVSLPTPPAKRSWYRVADTNLKSPDDFVPNGVSGIGKTYNIAPYSSILLEANS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02242 780 SUPERFAMILY Glycosyl hydrolase domain 685 778 - -
Bva12g02242 780 Pfam Alpha amylase, catalytic domain 277 388 IPR006047 GO:0005975
Bva12g02242 780 Gene3D Glycosidases 232 686 - -
Bva12g02242 780 Gene3D Immunoglobulins 89 227 IPR013783 -
Bva12g02242 780 SUPERFAMILY E set domains 103 240 IPR014756 -
Bva12g02242 780 MobiDBLite consensus disorder prediction 50 81 - -
Bva12g02242 780 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 108 206 IPR004193 GO:0004553|GO:0005975
Bva12g02242 780 Gene3D - 687 780 IPR013780 -
Bva12g02242 780 CDD AmyAc_Glg_debranch 236 674 - -
Bva12g02242 780 SUPERFAMILY (Trans)glycosidases 235 679 IPR017853 -
Bva12g02242 780 PANTHER GLYCOGEN DEBRANCHING ENZYME 82 778 - -
Bva12g02242 780 SMART aamy 256 672 IPR006047 GO:0005975
Bva12g02242 780 CDD E_set_GDE_Isoamylase_N 107 256 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02242 Bva-Chr12 17169054 17179695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02242 24 778 Glycoside Hydrolase AT4G09020 73.148 0.0 1170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02242 K01214 - gmx:100807545 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02242 12 17169054 17179695 Bva12g02242 12 17169054 17179695 ECH