Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02239 ATGCAGAGGCGTAAATGGATTCCATTGGTCCTGCTCAGGAAAGTACTAACCGCATCCATATGTTCCATCGCTTTTCTGGCTCTCTTCTCTGTCCACGTACACGTAGTTCCTTCATCCAAGGATGGCAAGTTCAACGACAAGATCCACACGTCTCATGATACGCAAAGCTGGACTCGTGAGCTCGTTCCGCCCCATTTATCAAAAGCTCCACTTCCTACTCCGAAGTTGCATTCTTCAAAAGGGAATTTGGATTATGAGAAGCTGTGGAAGCCTCCATCAAATCGTGGGTTTGTGCCCTGTATAGAACCTACTTCTAATTACACAACTCCTGGCGAGTCGCGAGGTTACCTTCTAGTGCATACAAATGGCGGGCTCAACCAAATGCGTGCTGGGATATGCGATATGGTTGCTGTAGCTCGTATCATAAATGCCACTCTTGTAATTCCAGAACTTGACAAAAGGTCATTTTGGCAAGACACAagCAATTTCTCTGATATTTTTGATGAAGAGCACTTCATAAATTCTCTAGCTAATgatgtaaaaattataaagaagcTTCCCAAGGGCCTTGTTAATTCTACCAGAATAGTTAAGCATTTCAGAAGCTGGTCTGGTATGGATTACTACGAGAATGAGATTGCTAATTTGTGGGAAGATTACCAAGTAATTCGAGCTGCCAAGTCTGATTCCCGCGTAGCAAACAACAACCTACCTCCAGAGATTCAGAAGCTTCGCTGTCGTGCTTGTTATGAAGCTCTTCGTTTCTCTCCTGGCATTGAACAAATGGGAAAATTGTTGGTGGAGAGGATGAGGTCATTTGGTCCTTATATTGCATTACATTTGCGTTTTGAGAAGGATATGCTTGCATTTAGTGGGTGCACTCATGATTTATCCACAGCTGAAGCTGATGAGCTAAGGATGATTAGAGAGAACACTTCACATTGGAAAGTAAAGGAAATTGATCCCATAGAACAGAGATCCAAAGGGTTTTGCCCCCTAACTCCTAAGGAAGTTGGAATTTTTCTTACTGCTCTTGGATACCCATCGAAGACTCCAATATATATTGCGGCTGGGGAGATATATGGGGGTGAATCCCATATGGCCGAACTGCGATCCCGCTACCCACTATTAATGAGCAAGGAAAAGTTGGCATCCATTGAGGAGCTTGAACCTTTTTCAAATCATGCATCGCAAATGGCTGCTCTGGACTATATTGTGTCAATTGAAAGTGATGTATTTATCCCTTCTTATTCTGGAAACATGGCAAGGGCCGTCGAAGGTCATCGTCGTTTTCTTGGACGTGGGAGAATAATATCTCCAGACAGGAAAGCTCTTGTTCGTTTATTTGATAAACTGGATCAGGGAAGAATGACAGAGGGGAAAACTCTATCAAATAAGATCATTGATCTCCACAGAAGACGGCTTGGCTCCCCGAGGAAGAGAAAAGGGCCAATTGCTGGAACGAAGGGCATGGATAGATTTCGCTCGGAAGAAGCCTTTTATGCAAATCCTTTACCTGACTGTTTATGTCGGATAGAATCAGCACGTCTGAATACCTCTCAAGTTCTTAGATA 1574 0.4295 MQRRKWIPLVLLRKVLTASICSIAFLALFSVHVHVVPSSKDGKFNDKIHTSHDTQSWTRELVPPHLSKAPLPTPKLHSSKGNLDYEKLWKPPSNRGFVPCIEPTSNYTTPGESRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVIPELDKRSFWQDTSNFSDIFDEEHFINSLANDVKIIKKLPKGLVNSTRIVKHFRSWSGMDYYENEIANLWEDYQVIRAAKSDSRVANNNLPPEIQKLRCRACYEALRFSPGIEQMGKLLVERMRSFGPYIALHLRFEKDMLAFSGCTHDLSTAEADELRMIRENTSHWKVKEIDPIEQRSKGFCPLTPKEVGIFLTALGYPSKTPIYIAAGEIYGGESHMAELRSRYPLLMSKEKLASIEELEPFSNHASQMAALDYIVSIESDVFIPSYSGNMARAVEGHRRFLGRGRIISPDRKALVRLFDKLDQGRMTEGKTLSNKIIDLHRRRLGSPRKRKGPIAGTKGMDRFRSEEAFYANPLPDCLCRIESARLNTSQVLR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02239 524 CDD O-FucT_plant 116 437 IPR024709 -
Bva12g02239 524 PIRSF UCP009360 1 513 IPR024709 -
Bva12g02239 524 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 4 521 - -
Bva12g02239 524 Pfam GDP-fucose protein O-fucosyltransferase 116 431 IPR019378 -
Bva12g02239 524 PANTHER OS02G0726500 PROTEIN-RELATED 4 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02239 Bva-Chr12 17147498 17151656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02239 16 511 Miscellaneous Gene Families AT1G22460 61.922 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02239 - - gmx:100795727 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02239 12 17147498 17151656 Bva06g02698 06 17004361 17008341 BWGD
Bva12g02239 12 17147498 17151656 Bva12g02239 12 17147498 17151656 ECH