Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02204 ATGGCCGGCCGAGTTATCGCCGTTGACGGGCCTTCCACTGCCTTTGACGGCAAGATAACGTTCGCCATTATCATCACCTGCATCGTTGCTGCTTCCAGTGGCCTTATTTACGGATATGATATCGGAATTTCAGGTGGTGTGACTACGATGCCGgcatttcttgaaaaattcttCCCGGAAATACTGAAAAAGGCTGCCAGCGCGGAAGTAAACATGTACTGCGTGTATGACAGCCAAGTATTAACACTATTCACGTCGTCCCTCTACCTAGCAGGTTTACTGTCTTCTCTTGTAGCCAGCCGTATCACCGCCACGTTTGGTCGCAGAAACACCATAATCTTTGGTGGCTGCACCTTCCTTGCCGGCGGTGCCCTTAACGGTGGTGCTGAAAATATTGCTATGCTCATCTTGGGCCGTATCTTGCTCGGCCTTGGTGTTGGTTTTACTAATCAAGCTGCTCCGATGTACCTTTCGGAGATTTCTCCGGCAAAATGGCGAGGTGCGTTCAACGCAGGGTTCCAATTCTTCCTAAGTGTAGGGGTGGTAGCTGCAGGCTGCATAAACTACGGCGCCTCCAAGCACACTTGGGGCTGGCGTCTCTCCCTCGGCCTTGCCGCTGCGCCAGCGGCTATTATAACAATCGGTGCTTTCCTCATAACTGATACTCCAAGTAGCTTAGTAGAACGTGGCAAGATAGAAAAAGCCAAACAAGCCCTAAGAAAAGTCAGAGGAAAAAATGCGAACGTGGAACCTGAATTTGAAGAGATTATCAAATGGTCCAAAGTTTCAAAAGCGTTGCAGCAAGAACCCTTCGTGACTATATTTCAGAGGCAATATCGACCTCATCTGGTTATGGCACTTGCTATCCCATTTTTTCAGCAGGTTACTGGTGTCAACATCGTCGCATTTTATGCTCCTAACCTCTTCCAGTCCGTGGGTCTTGGAAACGACACCGCATTGCTCTCGGCCATTATATTAGGTGTTGTTACCCTTGTCTCTATCCTAATAGCTAGTGTTGTTGTTGATCGATTTGGTCGAAAAGTCTTGTTCATAACCGGTGGCATTCTGATGCTTGTTTGCCAGATTGCGGTGGCAGTGGTACTGGCAGTGGTGAGTGGTACTTCTGGTGATAGGCACATCTCAACAAGCAATGCTACTGCAATACTTGTTCTAATGTGTTTCTACTCTGCTGGATTTGGTTGGTCATGGGGTCCTCTCACCTGGCTCATTCCAAGTGAAATTTTCCCTATGAAAATCAGGACCACCGGAGAGAGCATAAGCATTGCAGTGAACTTCGCCGTCACATTCGTCTTGTCCCAAACATTTTTGACAATGCTTTGCCACTTCAAGTACGGTGCTTTCTTGTTCTATGCAGGTTGGATTCTTATAATGACCCTCTTTGTCATCTTTTTCTTGCCGGAGACAAAAGGGATTCCATTGGATGATATGTATATGGTATGGGCCAAACACTGGTATTGGTGCCGCTTTGTTAAAATGGAACAAAGCCAAGATATTCATAGTCTTCCATG 1529 0.4663 MAGRVIAVDGPSTAFDGKITFAIIITCIVAASSGLIYGYDIGISGGVTTMPAFLEKFFPEILKKAASAEVNMYCVYDSQVLTLFTSSLYLAGLLSSLVASRITATFGRRNTIIFGGCTFLAGGALNGGAENIAMLILGRILLGLGVGFTNQAAPMYLSEISPAKWRGAFNAGFQFFLSVGVVAAGCINYGASKHTWGWRLSLGLAAAPAAIITIGAFLITDTPSSLVERGKIEKAKQALRKVRGKNANVEPEFEEIIKWSKVSKALQQEPFVTIFQRQYRPHLVMALAIPFFQQVTGVNIVAFYAPNLFQSVGLGNDTALLSAIILGVVTLVSILIASVVVDRFGRKVLFITGGILMLVCQIAVAVVLAVVSGTSGDRHISTSNATAILVLMCFYSAGFGWSWGPLTWLIPSEIFPMKIRTTGESISIAVNFAVTFVLSQTFLTMLCHFKYGAFLFYAGWILIMTLFVIFFLPETKGIPLDDMYMVWAKHWYWCRFVKMEQSQDIHSLP 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02204 509 ProSitePatterns Sugar transport proteins signature 1. 337 354 IPR005829 GO:0016021|GO:0022857|GO:0055085
Bva12g02204 509 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bva12g02204 509 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bva12g02204 509 PRINTS Sugar transporter signature 136 155 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bva12g02204 509 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bva12g02204 509 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bva12g02204 509 SUPERFAMILY MFS general substrate transporter 28 482 IPR036259 -
Bva12g02204 509 Pfam Sugar (and other) transporter 27 487 IPR005828 GO:0016021|GO:0022857|GO:0055085
Bva12g02204 509 Gene3D MFS general substrate transporter like domains 12 491 IPR036259 -
Bva12g02204 509 TIGRFAM SP: MFS transporter, sugar porter (SP) family 21 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bva12g02204 509 CDD MFS_STP 29 474 IPR044778 GO:0015145|GO:0015749
Bva12g02204 509 ProSitePatterns Sugar transport proteins signature 2. 141 166 IPR005829 GO:0016021|GO:0022857|GO:0055085
Bva12g02204 509 PANTHER SUGAR TRANSPORTER 6 501 - -
Bva12g02204 509 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 6 501 IPR045262 GO:0015144
Bva12g02204 509 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 476 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02204 Bva-Chr12 16979271 16983905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02204 50 498 Organic Solute Cotransporters AT1G34580 63.717 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02204 K24193 - gmx:100799418 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02204 12 16979271 16983905 Bva12g02204 12 16979271 16983905 ECH